Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10390 607 / 0 Nucleoporin autopeptidase (.1.2) AT1G59660 528 / 2e-171 Nucleoporin autopeptidase (.1) AT1G80680 155 / 3e-38 NUP96, SAR3, MOS3, PRE PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) AT1G63540 59 / 2e-08 hydroxyproline-rich glycoprotein family protein (.1) AT1G63530 44 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453200 [exp] 1044 / 0 AT1G10390 684 / 0.0 Nucleoporin autopeptidase (.1.2) Potri.003G180100 [exp] 182 / 7e-47 AT1G80680 1272 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Potri.010G059100 [exp] 45 / 0.0003 AT1G24310 448 / 1e-157 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033254 [exp] 614 / 0 AT1G10390 1023 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10008288 [exp] 608 / 0 AT1G10390 1013 / 0.0 Nucleoporin autopeptidase (.1.2) Lus10040555 [exp] 155 / 2e-38 AT1G80680 605 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10007993 [exp] 150 / 1e-36 AT1G80680 1280 / 0.0 PRECOCIOUS, MODIFIER OF SNC1,3, SUPPRESSOR OF AUXIN RESISTANCE 3 (.1) Lus10033256 [exp] 89 / 7e-18 AT1G10390 247 / 8e-71 Nucleoporin autopeptidase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0661 [poplar] [flax] Gain PF04096 [poplar] [flax] Nucleoporin2 Nucleoporin autopeptidase
Representative CDS sequence Show only first row Show all	>Potri.011G148800.3 pacid=42780563 polypeptide=Potri.011G148800.3.p locus=Potri.011G148800 ID=Potri.011G148800.3.v4.1 annot-version=v4.1 ATGTTTGGCGCTAGCAATCCTTTTGGACAATCATCAAATAGTCCGTTTGGGACAACGCAGCCGGCTTTTGGTCAGACCAGTAATGCAAGTAATAATCCTT TTGCGCCGAAGCCATTTGGTAGTCCAACAACTCCTTTTGGTGCACAAACAGGGAGTTCTATATTTGGGGGCACTTCAACTGGAATGTTTGGCACACCCCA AACTTCTTCATTCTCTGCAACAAATGCTTTTGGTAGCTCAACGCCTGCTTTTGGAGCATCTAGTACCCCTGCTTTTGGAGCGTCTAGTACCCCTGCTTTT GGTGCTTCATCGTCATCAGCATTTGGTGGTTCTTCTGTTTTTGGTCAGAAGCCTTTTGGAGGCTTTGGGTCTACTGCTCAAGCGAGTCCTTTTGGAAGCA CAAATCAGCAGTCACAACCAGCTTTTGGGAATAGTTTATTCGGTTCCACACCTTTTGGTGCACCAACTCAGTCTGCATTTGGCGCTACAAGTACTCCAGC CTTTGGCGCTACAAACACTCCACCCTTTGGTTCCACAAACACCACTCAAGCCTTTGGCGCCACAAGCACCACTCCAGCCTTTGGCTCCACAAGCACCACT CCAGCCTTTGGCTCCACAAGCACCGCCCCAGCCTTTGGCGCCCCAAGCTCCGCCCCAGCCTTTGGCACCCCAAGCACCACCCCAGCCTTTGGCTCAACGG CGACTCCTGGTTTTGGTAGCACAGGAACTACATTTACCAGTTCCCCGTTGTTTGGAACTGGTGGAGCTTTTGGAACTTCCACCACTTCAGGTTTTGGAGC TTCAACTACCACACCTGCCTTTGGGGCACCGACTACTTCTGCTTTTGGGGCTACTTCATCACCATCCTTTACGTTTTCATCCAGTCCAGGTTTTGGCCAA TCAGCTTCTGCTTTTGGGAGCAGCCCATTTGGAAGTACTACATCAACTTTTCCAGCCCAGACTTCTCCCTTTGGAGCCCAGAGTACAACATCACCATTTG GGAACAATGGCTTTGCCCAGTCAGGTTTTGGGGCGCAACGTCCTGGAAGTAGAGCATCACCATATGCAGAAACAGCTGAGGCAGAAGGTGGTGCACAGGC TGGGAAATTATTGTCGATATCAGCCATGACTGCATACAAAGATAAAAGCCATGAGGAGCTAAGGTGGGAGGACTATCAATTGGGAGACAAAGGTGGACCG CTTCCTGCTGGTCAATCTCCTGGCGGGGGCGGATTTAATGTCTCAGCCTCACAGCCAAATCCTTTTGCTCCTCCAACTGGACTTGGTCAAACGTCTGCAA ATATATTTTCTTCAACAACTACAAACCTGTTTGCTCCAAAAACTCAAACATCTACACCTTCATTCAACACAACCTCCTTTGGCCCTTCAACATCTTCCAA TCTCTTTCAGTCATCAACAACACCTGCATTCTCAGCTGGTTCATCTCCGTCTCTTTTTGGATCAACAAGTACACCTAGTTTTAGTTCAACACCATCCTTG TTTAGTTCTACTGTAGGCCAAGGAACTGCTTCACCATTTGGTTCTAGTATGTTTAATAACACCCAACCATCTCTCTCATTCCCATCAACCACACCTTCAC TGGGACAGGCTACTGCATTTTCACAGCCCAGTCCATTTGGACCAAGTACCACTAGTTCATTGTTCAGTAGCCCTTCCACTGGTGGCCTTTTCTCAAGCAC CCCGTCTCTGATAACTCCAAATCTGGGGGGGTTTAATCAAATGACACCATCTCAACCAGCACCTTTTCAAATGTCTCAGCCAGCTCAGAATGCAGGTACT TTTGCCTCGAACTTTAGTCAGACACAAGCAGCTGGTATGAGTGGCTTTGCTGGTGTATCAAACAATTTGGGGCAATTGTCTACCCCACAAAGTGCTGTTG CTATACAACCAGTTCCTGTTACAAATCCATTTGGAACACTTCCTGCAATGCCTCAAATGTCTATTGGTCGAGCTGGAACTACACCTTCAGTTCAATATGG GATTTCTTCTATGCCTGTCATTGAGAAACCCTCTCCTGTTAGAGTATCATCCTTATTGACTTCTCGGCACCTGTCACAGAGGAGGATTAGGTTGCCTGCG AGGAAATATTACCCTAAGCATGATGGTCCAAAGGTTCCATTTTTCAGTGATGAAGAAGAAACGCCCAGTACACCAAAGGCGGATGCTCTTTTCATTCCGA GGGAAAACCCAAGAGCTCTGGTGATTCGTCCTATGGACCAGTGGCCTTCAAGGGCAAGTGCAGAGAAAGCATCTCCAGTGAATGCATCTGCACCAGTACA TGAGAATGGAAAAATTTCAGAATCAGACTTTGCCAATCTCTCAAATGGTTACACTGCTGGTGATAAAAATAAAAATTTGGCTGAAAATGGTGTAATCAAG GAGCAAGCCCCCCATGTCAAAGTCAACCAGAAACCTAATGGAGTCCATGAGGATCATTCAGCTCAGAAAGAAGAGTCCTACATGACACTCAGTGGTCACA GAGCTGGCGAGGCTGCAATTGTGTATGAGCATGGAGCAGATATTGAGGCACTAATGCCAAAACTGCGACGTTCTGACTATTTTACTGAGCCTCGTATCCA GGAACTGGCAGCCAAGGAGAGGGCTAAACCAGGTTTCTGCCGCCATGTTAAGGATTTTGTGGTTGGAAGGCATGGCTATGGAAGCATCAAGTTCTCGGGT GAAACAGATGTTCGACGGCTTGATCTTGAGTCCCTTGTTCAGTTTAATAACCGGGAGGTTATTGTGTACATGGATGATAGCAAGAAACCACCTGTTGGAC AAGGTCTCAACAAGCCCGCTGAGGTAACACTTCTCAACATAAAATGCTTTGACAAAAAGACTGGACGTCAGTTCACAGAAGGACCAAAAATAGAAAAATA CAAGGAGATGCTCAAAAGAAAGGCCGAAGACCAAGGCGCCGAATTTGTTTCATATGACCCTGTTAAAGGAGAGTGGAAGTTCAAGGTCAACCATTTCAGC AAGTACATGCTGGAGGAGGAAGAAGAGGATCGGGATGCGCAAGCTACCGCAGATTGTTGA
AA sequence Show only first row Show all	>Potri.011G148800.3 pacid=42780563 polypeptide=Potri.011G148800.3.p locus=Potri.011G148800 ID=Potri.011G148800.3.v4.1 annot-version=v4.1 MFGASNPFGQSSNSPFGTTQPAFGQTSNASNNPFAPKPFGSPTTPFGAQTGSSIFGGTSTGMFGTPQTSSFSATNAFGSSTPAFGASSTPAFGASSTPAF GASSSSAFGGSSVFGQKPFGGFGSTAQASPFGSTNQQSQPAFGNSLFGSTPFGAPTQSAFGATSTPAFGATNTPPFGSTNTTQAFGATSTTPAFGSTSTT PAFGSTSTAPAFGAPSSAPAFGTPSTTPAFGSTATPGFGSTGTTFTSSPLFGTGGAFGTSTTSGFGASTTTPAFGAPTTSAFGATSSPSFTFSSSPGFGQ SASAFGSSPFGSTTSTFPAQTSPFGAQSTTSPFGNNGFAQSGFGAQRPGSRASPYAETAEAEGGAQAGKLLSISAMTAYKDKSHEELRWEDYQLGDKGGP LPAGQSPGGGGFNVSASQPNPFAPPTGLGQTSANIFSSTTTNLFAPKTQTSTPSFNTTSFGPSTSSNLFQSSTTPAFSAGSSPSLFGSTSTPSFSSTPSL FSSTVGQGTASPFGSSMFNNTQPSLSFPSTTPSLGQATAFSQPSPFGPSTTSSLFSSPSTGGLFSSTPSLITPNLGGFNQMTPSQPAPFQMSQPAQNAGT FASNFSQTQAAGMSGFAGVSNNLGQLSTPQSAVAIQPVPVTNPFGTLPAMPQMSIGRAGTTPSVQYGISSMPVIEKPSPVRVSSLLTSRHLSQRRIRLPA RKYYPKHDGPKVPFFSDEEETPSTPKADALFIPRENPRALVIRPMDQWPSRASAEKASPVNASAPVHENGKISESDFANLSNGYTAGDKNKNLAENGVIK EQAPHVKVNQKPNGVHEDHSAQKEESYMTLSGHRAGEAAIVYEHGADIEALMPKLRRSDYFTEPRIQELAAKERAKPGFCRHVKDFVVGRHGYGSIKFSG ETDVRRLDLESLVQFNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTGRQFTEGPKIEKYKEMLKRKAEDQGAEFVSYDPVKGEWKFKVNHFS KYMLEEEEEDRDAQATADC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.011G148800 [exp]	0	1
					Potri.009G112922 [exp]	1.73	0.8560
AT5G13960		SDG33, KYP, SUV...	SET DOMAIN PROTEIN 33, KRYPTON...		Potri.002G237950 [exp]	7.34	0.7945
AT3G11040		AtENGase85B	Endo-beta-N-acetyglucosaminida...		Potri.008G073001 [exp]	7.34	0.8186
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.013G006000 [exp]	10.48	0.8241	MOM.2,1
AT2G29210			splicing factor PWI domain-con...		Potri.009G036900 [exp]	12.48	0.7848
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Potri.008G009400 [exp]	14.49	0.7555
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Potri.010G172500 [exp]	15.49	0.7902
AT4G20020			unknown protein		Potri.004G218800 [exp]	17.32	0.8114
AT5G55840			Pentatricopeptide repeat (PPR)...		Potri.001G368700 [exp]	18.30	0.7956
AT4G20020			unknown protein		Potri.004G218650 [exp]	19.62	0.7863

Compare expression of checked genes

Potri.011G148800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.