Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G30340 369 / 5e-127 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01440 353 / 9e-121 nodulin MtN21 /EamA-like transporter family protein (.1) AT4G01450 291 / 2e-96 nodulin MtN21 /EamA-like transporter family protein (.1.2.3) AT1G01070 291 / 3e-96 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT4G01430 282 / 9e-93 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G11460 278 / 1e-91 nodulin MtN21 /EamA-like transporter family protein (.1) AT1G11450 234 / 3e-75 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT3G18200 233 / 1e-73 nodulin MtN21 /EamA-like transporter family protein (.1.2) AT1G09380 232 / 4e-73 nodulin MtN21 /EamA-like transporter family protein (.1) AT5G07050 225 / 3e-70 nodulin MtN21 /EamA-like transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G453000 [exp] 635 / 0 AT3G30340 369 / 4e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.002G182700 [exp] 422 / 1e-147 AT4G01440 298 / 2e-99 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.014G108500 [exp] 411 / 1e-143 AT3G30340 361 / 8e-124 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.001G108600 [exp] 236 / 8e-75 AT1G25270 293 / 2e-97 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.005G233600 [exp] 235 / 3e-74 AT1G75500 584 / 0.0 Walls Are Thin 1 (.1.2) Potri.005G006600 [exp] 233 / 7e-74 AT1G09380 477 / 2e-169 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.008G165600 [exp] 231 / 5e-73 AT5G07050 281 / 4e-92 nodulin MtN21 /EamA-like transporter family protein (.1) Potri.015G042900 [exp] 229 / 3e-72 AT3G18200 476 / 4e-169 nodulin MtN21 /EamA-like transporter family protein (.1.2) Potri.011G148400 [exp] 229 / 4e-72 AT5G07050 261 / 3e-84 nodulin MtN21 /EamA-like transporter family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030168 [exp] 393 / 3e-136 AT3G30340 369 / 7e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10007862 [exp] 389 / 6e-135 AT3G30340 371 / 1e-127 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10038959 [exp] 238 / 2e-75 AT3G18200 497 / 2e-177 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10026113 [exp] 236 / 2e-74 AT5G07050 537 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10027251 [exp] 235 / 6e-74 AT3G18200 493 / 2e-175 nodulin MtN21 /EamA-like transporter family protein (.1.2) Lus10008708 [exp] 234 / 8e-74 AT5G07050 552 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10008706 [exp] 233 / 5e-73 AT5G07050 543 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10026112 [exp] 236 / 9e-73 AT5G07050 555 / 0.0 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10020987 [exp] 231 / 1e-72 AT1G25270 301 / 8e-100 nodulin MtN21 /EamA-like transporter family protein (.1) Lus10030169 [exp] 225 / 3e-72 AT3G30340 211 / 5e-67 nodulin MtN21 /EamA-like transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [poplar] [flax] DMT PF00892 [poplar] [flax] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Potri.011G149000.1 pacid=42781301 polypeptide=Potri.011G149000.1.p locus=Potri.011G149000 ID=Potri.011G149000.1.v4.1 annot-version=v4.1 ATGGCTGATTGCAATGAATGGAAACCTTTCATTGCGATGATAACAGTTGATTTTGCCTTTTCCATTGTGAATATTCTTCTAAAGAAAGTCCTTGATGAGG GGATTAACCATTTGGTCCTTATCACCTACCGGCTTTCGATTTCTGCTCTTTTCTTGGGTCCAATTGGCTACTTCTGGGAAAGGGGTAGCAGACCAAAGCT CACCTTTCGGATCTCATGTTACCTGTTCCTTAGTGCCATTGTTGGGGCATCACTGACACAATACTTCTTCCTTATCGGCATTCAATACACATCTGCTACA TTTGCATGTGCCTTCGTCAACATGGTTCCTGTTGTTACATTTATAATGGCACTGCCATTCAAAATGGAGACTGTTCATATAAAATCCAACAGTGGCAAAG CCAAAACACTCGGTGCCCTGGTGTGTGTTGCAGGTGCCATACTGTTGACTGTTTACCGAGGAGCGCCACTATTTAACCATTCACCCAATCAAGCTGTAAC TCGAGCCATGGATCATGGTCTAAAGCTGAGCCATGCTAGAAGGGCCGAGAGATGGACCTTTGGTTGTATAGCTTTGCTTGCAGGAACCTTGTTGTGGTCT TCTTGGTTTGTACTCCAATCACATATTGGCAGGAGATACCCCTGTCAGTATTCTAGCACAGCCATTATGTCCTTCTTCGGTGCAATTCAATCAGCTGTTT TATGCTTGTCCACTAAAAGGAGCCTCTCCATATGGGTTCTGAAAGGAAAGATAGAAATTATAACTGTCCTGTATGCTGGAATGATTGGATCAGGCTTGTG CTATGTGGGCATGTCATGGTGTGTTAAGAAAAGGGGTCCCGTCTTTACAGCAGCATTCAGTCCCCTAGTTCAGATAATGGCAGCCATGCTTGATGTCCCT GTACTCCATGAGGAACTCTATCTTGGCAGTTTGCTGGGATCCATCTTTGTAATCATTGGCTTATACATTCTTCTATGGGGTAAGAACAAAGAAATGCAGA ATCATGCAACAAGAGTAGCTCAAGAAGCTGAAGAGGTCAAGGAACAAGAACCCCCCGTACAAGTCATCACTGTCTCTTTTGATTCAAGGTGTCATTGA
AA sequence Show only first row Show all	>Potri.011G149000.1 pacid=42781301 polypeptide=Potri.011G149000.1.p locus=Potri.011G149000 ID=Potri.011G149000.1.v4.1 annot-version=v4.1 MADCNEWKPFIAMITVDFAFSIVNILLKKVLDEGINHLVLITYRLSISALFLGPIGYFWERGSRPKLTFRISCYLFLSAIVGASLTQYFFLIGIQYTSAT FACAFVNMVPVVTFIMALPFKMETVHIKSNSGKAKTLGALVCVAGAILLTVYRGAPLFNHSPNQAVTRAMDHGLKLSHARRAERWTFGCIALLAGTLLWS SWFVLQSHIGRRYPCQYSSTAIMSFFGAIQSAVLCLSTKRSLSIWVLKGKIEIITVLYAGMIGSGLCYVGMSWCVKKRGPVFTAAFSPLVQIMAAMLDVP VLHEELYLGSLLGSIFVIIGLYILLWGKNKEMQNHATRVAQEAEEVKEQEPPVQVITVSFDSRCH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G30340			nodulin MtN21 /EamA-like trans...		Potri.011G149000 [exp]	0	1
AT2G35585			unknown protein		Potri.010G101500 [exp]	5.00	0.9237
AT1G77700			Pathogenesis-related thaumatin...		Potri.005G173900 [exp]	8.60	0.9150
AT2G18196			Heavy metal transport/detoxifi...		Potri.011G149500 [exp]	10.53	0.9024
AT2G46630			unknown protein		Potri.002G175400 [exp]	10.95	0.9010
AT1G19530			unknown protein		Potri.005G228600 [exp]	11.40	0.8999
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Potri.010G039800 [exp]	14.24	0.8886
AT1G71692	MADS	XAL1, AGL12	XAANTAL1, AGAMOUS-like 12 (.1)		Potri.019G076800 [exp]	16.97	0.8715	AGL12.1
AT3G01960			unknown protein		Potri.017G065916 [exp]	18.00	0.8114
AT3G28455		CLE25	CLAVATA3/ESR-RELATED 25 (.1)		Potri.017G074600 [exp]	20.78	0.8847	CLE25.1
AT3G25560		NIK2	NSP-interacting kinase 2 (.1.2...		Potri.010G134100 [exp]	22.58	0.8709

Compare expression of checked genes

Potri.011G149000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.