Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45530 236 / 3e-78 RING/U-box superfamily protein (.1) AT2G37950 62 / 2e-11 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G05830 58 / 4e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G59000 58 / 5e-10 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G34200 55 / 6e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G01070 52 / 5e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G03180 53 / 7e-08 RING/U-box superfamily protein (.1.2) AT5G38070 52 / 8e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G02610 51 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 51 / 2e-07 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G452800 [exp] 373 / 4e-132 AT2G45530 259 / 3e-87 RING/U-box superfamily protein (.1) Potri.009G039700 [exp] 60 / 8e-11 AT5G05830 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.005G070100 [exp] 60 / 3e-10 AT5G08750 414 / 1e-144 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.007G098900 [exp] 59 / 6e-10 AT5G08750 411 / 2e-143 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Potri.001G246700 [exp] 57 / 6e-10 AT5G59000 159 / 2e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.006G094000 [exp] 58 / 8e-10 AT5G05830 192 / 8e-62 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.016G105900 [exp] 57 / 1e-09 AT5G05830 191 / 2e-61 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G111700 [exp] 57 / 2e-09 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 56 / 5e-09 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008286 [exp] 247 / 3e-82 AT2G45530 258 / 1e-86 RING/U-box superfamily protein (.1) Lus10033252 [exp] 246 / 8e-82 AT2G45530 258 / 7e-87 RING/U-box superfamily protein (.1) Lus10035549 [exp] 67 / 4e-13 AT5G05830 157 / 4e-48 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040240 [exp] 66 / 7e-13 AT5G05830 187 / 4e-60 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10027744 [exp] 66 / 1e-12 AT5G05830 162 / 8e-50 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10016451 [exp] 64 / 2e-12 AT5G05830 164 / 1e-51 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10000211 [exp] 61 / 3e-12 AT2G45530 45 / 3e-07 RING/U-box superfamily protein (.1) Lus10028249 [exp] 64 / 4e-12 AT5G05830 184 / 8e-59 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10040716 [exp] 62 / 1e-11 AT5G05830 159 / 1e-49 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10017197 [exp] 60 / 2e-10 AT5G05830 182 / 1e-57 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.011G149200.3 pacid=42781326 polypeptide=Potri.011G149200.3.p locus=Potri.011G149200 ID=Potri.011G149200.3.v4.1 annot-version=v4.1 ATGCAGAATGATGGGTCTGGTAGAGATGGCACCACCAGAGCTGGTGGAGATGTGCCCCTCACTGAGGTTGACCTGGAGAAGCAGGATAACAGTAAGGTGT TAACGCAAGAAGGCGGTAATGGGGTCTTGTCAGGGAATTCTGATTATTCACCAGTGATTGCCATTGTGGTTTCTAATGGCGAGTCTCCTGTGGCTGCCAG CAAGGAAGAGTTGCATAGTGTGGATTTTCCCAGAAAAGGGTCGTTGTCAAGGACTTCAAGTTCGCACGAACAATGCAGAGTTTGTCAGCAGGAGAAGGAA GAAGTTCTCATAGATCTTGGATGCAAATGTAAAGGCGGTCTTGCAAAAGCCCATCGCACATGTATTGATACCTGGTTTAGCACAAGAGGGTCCAACAAAT GTGAGATATGCCAGGCTGTAGCTGTAAATGTGTCACCTCCAGAATCTCAGCCAATTCAGGCAAACTACTGGGTTTGGAGAATTGACCCAAACTTTAGACC ACGAGACCGTGATAGGGGCTGTTTTAGTCCTCTTTGGGTGGCGTTCTCAATCCTTATTGGTGGTCTCTTGTTGGATGTGCTGATATCCATCACCCTTGGT GTTTCTGCCTTACCTGTTAACATAATAATTGGGGTCATTGTTGTTCTCGGACTTGGAACCGCGCTTCGGCTAGCCCTGGAATTCTGCCATGAGTGGAGTT TTAGGAGAGCAGTTCAAAGGGCAGATGCCAATGAGAATCATGGTTACCATCCAGCTTCGTAG
AA sequence Show only first row Show all	>Potri.011G149200.3 pacid=42781326 polypeptide=Potri.011G149200.3.p locus=Potri.011G149200 ID=Potri.011G149200.3.v4.1 annot-version=v4.1 MQNDGSGRDGTTRAGGDVPLTEVDLEKQDNSKVLTQEGGNGVLSGNSDYSPVIAIVVSNGESPVAASKEELHSVDFPRKGSLSRTSSSHEQCRVCQQEKE EVLIDLGCKCKGGLAKAHRTCIDTWFSTRGSNKCEICQAVAVNVSPPESQPIQANYWVWRIDPNFRPRDRDRGCFSPLWVAFSILIGGLLLDVLISITLG VSALPVNIIIGVIVVLGLGTALRLALEFCHEWSFRRAVQRADANENHGYHPAS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G45530			RING/U-box superfamily protein...		Potri.011G149200 [exp]	0	1
AT4G27435			Protein of unknown function (D...		Potri.001G403600 [exp]	2.23	0.9506
AT1G09645			unknown protein		Potri.019G077100 [exp]	3.00	0.9464
AT3G44150			unknown protein		Potri.016G068000 [exp]	5.09	0.9498
AT3G47810		ATVPS29, MAG1	VACUOLAR PROTEIN SORTING 29, M...		Potri.011G077900 [exp]	5.74	0.9304
AT2G03350			Protein of unknown function, D...		Potri.008G092500 [exp]	7.48	0.9346
AT3G58460		ATRBL15	RHOMBOID-like protein 15 (.1.2...		Potri.006G197900 [exp]	8.06	0.9295
AT4G29850			Eukaryotic protein of unknown ...		Potri.018G133500 [exp]	10.67	0.9223
AT4G15830			ARM repeat superfamily protein...		Potri.010G014200 [exp]	11.48	0.9369
AT2G32980			unknown protein		Potri.014G158000 [exp]	12.32	0.9341
AT1G75020		LPAT4	lysophosphatidyl acyltransfera...		Potri.002G133100 [exp]	12.48	0.9299

Compare expression of checked genes

Potri.011G149200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.