Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G33060 387 / 2e-125 NAC ANAC014 NAC 014 (.1.2) AT4G35580 356 / 3e-115 NAC NTL9, CBNAC NAC transcription factor-like 9 (.1.2.3) AT3G49530 256 / 2e-77 NAC NTL6, ANAC062 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) AT5G24590 251 / 8e-76 NAC TIP, ANAC091 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) AT1G65910 219 / 3e-62 NAC ANAC028 NAC domain containing protein 28 (.1) AT5G17260 214 / 8e-62 NAC ANAC086 NAC domain containing protein 86 (.1) AT3G17730 205 / 4e-61 NAC ANAC057 NAC domain containing protein 57 (.1) AT3G03200 208 / 2e-59 NAC ANAC045 NAC domain containing protein 45 (.1) AT5G46590 194 / 2e-56 NAC ANAC096 NAC domain containing protein 96 (.1) AT4G17980 190 / 2e-55 NAC ANAC071 NAC domain containing protein 71 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G452700 [exp] 837 / 0 AT1G33060 415 / 7e-137 NAC 014 (.1.2) Potri.015G004100 [exp] 297 / 1e-91 AT3G49530 309 / 5e-99 NTM1 \(NAC WITH TRANSMEMBRANE MOTIF 1\)-LIKE 6, NAC domain containing protein 62 (.1) Potri.012G007500 [exp] 286 / 2e-87 AT5G24590 306 / 4e-98 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Potri.010G174600 [exp] 204 / 8e-60 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.017G139500 [exp] 213 / 1e-59 AT1G65910 461 / 1e-154 NAC domain containing protein 28 (.1) Potri.004G081000 [exp] 211 / 5e-59 AT1G65910 465 / 4e-156 NAC domain containing protein 28 (.1) Potri.008G081500 [exp] 201 / 2e-58 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.015G030200 [exp] 197 / 2e-58 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.003G089800 [exp] 198 / 5e-57 AT4G17980 319 / 6e-109 NAC domain containing protein 71 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033251 [exp] 517 / 5e-177 AT4G35580 410 / 5e-138 NAC transcription factor-like 9 (.1.2.3) Lus10008285 [exp] 502 / 2e-171 AT4G35580 421 / 2e-142 NAC transcription factor-like 9 (.1.2.3) Lus10010148 [exp] 354 / 1e-113 AT4G35580 325 / 9e-105 NAC transcription factor-like 9 (.1.2.3) Lus10017353 [exp] 286 / 1e-88 AT4G35580 245 / 7e-75 NAC transcription factor-like 9 (.1.2.3) Lus10032919 [exp] 269 / 2e-81 AT5G24590 314 / 7e-102 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10015587 [exp] 263 / 3e-79 AT5G24590 306 / 9e-99 Arabidopsis NAC domain containing protein 91, TCV-interacting protein (.2) Lus10042284 [exp] 209 / 8e-62 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 208 / 1e-61 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10007377 [exp] 215 / 2e-60 AT1G65910 431 / 7e-143 NAC domain containing protein 28 (.1) Lus10020794 [exp] 215 / 3e-59 AT5G10360 449 / 8e-153 Ribosomal protein small subunit 6b, embryo defective 3010, Ribosomal protein S6e (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.011G149300.1 pacid=42781257 polypeptide=Potri.011G149300.1.p locus=Potri.011G149300 ID=Potri.011G149300.1.v4.1 annot-version=v4.1 ATGGTGGCTATGGTGCCTGTGGACTCGCTACCTTTAGGGTTTAGATTCAGGCCAACTGATGAAGAATTGATAAGCCACTACTTGAGACTTAAAATCAACG GTCGTGATTCTGAAGTTGAAGTCATCCCTGAAATTGATATTTGTAAATGGGAGCCTTGGGATTTGCCTGGGCTATCTGTGATAAAGACTGATGATCCAGA GTGGTTCTTCTTCTGCCCACGAGATAGGAAGTATCCTAACGGTCATCGTTCGAATAGAGCAACGGAAGCTGGTTATTGGAAGGCTACAGGGAAGGATCGA ACAATAAAGTCTCGAAAATCAGCTGGTAATACTACCTTGATTGGTATGAAGAAAACACTGGTTTTCTACCGTGGTCGTGCTCCAAATGGAAAGCGTACAA ACTGGGTCATGCATGAGTATCGTCCCACTGAAAAGGATCTTGATGGTACCGGCCCTGGCCAGGGTGCATTCGTCCTTTTCCGCTTGTTCAGGAAGCCAGA AGAGAGGCCCAGCATTGTAAAGTATGATGAAATAGAACAGACTGCATACTCTACTACAGCTGCCAAGTCCTCTCCTGATGATGCATCATCCGATCTTGTT CAAGAAACAGCTACATCTGAAATGAGTTCAGGAAAGCAACCTGAAGATATAAAGATGTGGTCAACTGAGTCTGACAACATGACTTCTAATGCTGTGGTGC CTATTGATAGCTGCAGTAATAGTCGTGCAACTTCAGATGTTGAAGATCAAGTGCCAGAAGCAACAGCTGTGGAGGCATATCTACCACTGGATGAAAATTC ACCCTTACATGAGCCCATGTCTGGTGAACCTGATTGTAAAGTTTTCTCCCCAATGCGATCACAGATTCCAGTGGACCTCGGATACTACATGGATTCACCT TATGCCAGTGACTTTGGCAACAATCAAAATGGATTTTCCTTTCTGGATGGCACCAGTGAACAGGATGTATCCCTCACTGAATTGTTAGATGATTACTTAA ACAACCATGATGACTATTCTGGTGAAGAAACAAGCAGTCAGAACACCTTGGGTGTTGGAAGTGAGACTCAGTTGTTTGGCCAGGTACCACCAGGAAACTT TCATGTTAAGGACCATGGTATATACAATGGGATGGCTCAAGAACTGCATGCTTCACACATGGGAGCCCCGGTGTGGCCTGGTGATCAATTTGATAGCTAT GAGCTATTACAATTGCAAACTGCACTTGGTACTTGCCAAGCACCCACATCCTTTTCTGATGGAGAAATTGGAAGGGGAAATATTGGACATTTTGGAAATA ACTTTGTTGGACAAGATGCTCCACCTGCCAATTCTGCAATCTCATCCTTTGATGTATATAATAGTATGGAAGAACCAACCAGCCAAATGACCTCTGTAGA CTATGGCAGTGGTGTTAGTGGATCTGGAATCAAGATTAGGACCCGCCAGCCTCAAGTCCGGCGACATTCAGACAACTTGGTTGCCCAGGGCAGTGCCCCA AGAAGAATCCGTTTGCTGGTAGAACGTTCAGTTGAATCAGTTGGAAATTTCAAGGTTAATGATGCAACCCACGTTGATGATGAAGATGAGGTGCAATCAG CTGTAACCGAGGCCACTGGAGATGCTGAAAAACAGGCCTCTACAGTCGATGAAGATGAAGATGAGGTGCAATCAGCTGTAACCGAGGCCACTGGGGATGC TGAAAAACAGGCCTCTACAGATGATGAAGATGAAGATGAGGTGCAATCAGCTGTAACCGAGGCCACTGGAGATGCTGAAAAACAGGCCTCTGCAGTTGAT GATCTGCAGAATGAAAGCCCACTTGCAATTTCCAAGACCAACAAGGAAATTGCTGAAGAGTCTTCTTCAAATCTGAGGTTACGAGTGAAAAGGGAAGCTG ACTCCGGGAGCGGTCAGATAGCATCGCCAGCTTTTCCAGCTGCACCTCCTGCACATCATGGACACAAATCATTATCAATTTATGTCAGCATTTTCCTCCT CCTGATCTTGTTCATAGCTTTTGCTGGGATGTGGAGATCCCTCGAGTCTGTGAAGTTGCTCTGGTTACAGGATGGTGCAAGTGATAATTTGTAG
AA sequence Show only first row Show all	>Potri.011G149300.1 pacid=42781257 polypeptide=Potri.011G149300.1.p locus=Potri.011G149300 ID=Potri.011G149300.1.v4.1 annot-version=v4.1 MVAMVPVDSLPLGFRFRPTDEELISHYLRLKINGRDSEVEVIPEIDICKWEPWDLPGLSVIKTDDPEWFFFCPRDRKYPNGHRSNRATEAGYWKATGKDR TIKSRKSAGNTTLIGMKKTLVFYRGRAPNGKRTNWVMHEYRPTEKDLDGTGPGQGAFVLFRLFRKPEERPSIVKYDEIEQTAYSTTAAKSSPDDASSDLV QETATSEMSSGKQPEDIKMWSTESDNMTSNAVVPIDSCSNSRATSDVEDQVPEATAVEAYLPLDENSPLHEPMSGEPDCKVFSPMRSQIPVDLGYYMDSP YASDFGNNQNGFSFLDGTSEQDVSLTELLDDYLNNHDDYSGEETSSQNTLGVGSETQLFGQVPPGNFHVKDHGIYNGMAQELHASHMGAPVWPGDQFDSY ELLQLQTALGTCQAPTSFSDGEIGRGNIGHFGNNFVGQDAPPANSAISSFDVYNSMEEPTSQMTSVDYGSGVSGSGIKIRTRQPQVRRHSDNLVAQGSAP RRIRLLVERSVESVGNFKVNDATHVDDEDEVQSAVTEATGDAEKQASTVDEDEDEVQSAVTEATGDAEKQASTDDEDEDEVQSAVTEATGDAEKQASAVD DLQNESPLAISKTNKEIAEESSSNLRLRVKREADSGSGQIASPAFPAAPPAHHGHKSLSIYVSIFLLLILFIAFAGMWRSLESVKLLWLQDGASDNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G33060	NAC	ANAC014	NAC 014 (.1.2)		Potri.011G149300 [exp]	0	1
AT4G36550			ARM repeat superfamily protein...		Potri.005G122100 [exp]	2.64	0.7715
AT1G49850			RING/U-box superfamily protein...		Potri.001G297000 [exp]	5.47	0.6793
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Potri.014G041300 [exp]	11.13	0.7398
AT1G02170		AtMCP1b, ATMC1,...	LSD ONE LIKE 3, ARABIDOPSIS TH...		Potri.014G052500 [exp]	11.74	0.7238
AT2G40950	bZIP	BZIP17	Basic-leucine zipper (bZIP) tr...		Potri.016G032400 [exp]	14.83	0.6909
AT1G09070		(AT)SRC2, (AT)S...	soybean gene regulated by cold...		Potri.013G018600 [exp]	16.52	0.7172
AT1G19270		DA1	DA1 (.1)		Potri.014G039900 [exp]	16.70	0.7327
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	16.97	0.7322
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	25.88	0.7027
AT5G24590	NAC	TIP, ANAC091	Arabidopsis NAC domain contain...		Potri.012G007500 [exp]	28.49	0.6806

Compare expression of checked genes

Potri.011G149300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.