Plant FIBer expression Database

Potri.011G149601 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G33050 50 / 8e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G452300
[exp]
573 / 0 AT1G33050 63 / 6e-10 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.011G149601.1 pacid=42781142 polypeptide=Potri.011G149601.1.p locus=Potri.011G149601 ID=Potri.011G149601.1.v4.1 annot-version=v4.1
ATGGCCAGTGACACTAAAAGAGGGTCTGTTTCTCGTTTATCACCATTAGCTAAGCCTTTTATCCTGAAGACACCCAAGAACTCAAGCTCTGCCCTTAATT
CTTCACTTCAAGATACAAGCTTGAGCCCTTCAAGTTCAAGGCTTGCTCAGTCTTTTTCAAGTTTCAGTGTAGAAGGTGACTCCTTTTCTTATTATTCTCT
AAACCCATCTCGGGTTTATCAAGGTTCAGCTGATTTTGGTTTATTTAATGAGTCAAAGTCAGACTTGGATACTCTCCTTGTAAGTAAGTCCGCTGAGCTT
GGCTATAAGGCTCACAACAGTGGTGATCACCAAGAAATTCTTCACTGGAAGGATAAGCATGATGGCTTTTCAATGTCTAATGATGACCCCACCAAACAAG
GATCTTCTACTGAAGGATTGAAGTTGAGAGCAGAAACATCTGATCATGTGTGCAGAAAATTCAGTGGTATCTCTAGAAAGGATGATGAAGTCAGACCTAA
AAGTACTAGGCAAATTGACTCTCAACATGTCTCTTTTTCAGCAGTGAAGTCAAGGCCAATCTCTTCCAAGTTTTCAACCTCATCAGATCTGCACTCTTCT
GCCTTAGTTCAAGATCCTCAAAGCGGAGTTCCAGCCATATCTTGGAGCTCAAATGATTCCAAGATTCCTTCTTTTGAAAGAAGATTTTCGCAGCAACTCG
ATGCTTGTACAACCAAAGTGAATTCTTCCCCTTCATCAGATAGCAATTCTTTGCGGGCTCTAGACTCTGAATCTTCGGGAACTGGTTCAAGTTATTCACC
CTTTAATCATGCCTTGTCACAGACCCTAGATTCTGGTGGACATGGTGGAGTCAGCAAGAGTGGCATTTTTTGGTATAGTCTAGCCAGTCTAGTAGATGCT
GCTGTGGATAAAAGGAAGGAAGTTTTCCATGATGAAGTCCTGACAGATAAAAGTAAAGTAAAAATGAGCAAACCTGCCACCCAAGAGGTTATGGAGCCCT
TGTCAATGACAGTGTCTGAGCTGCAAATCACTTGTCCTAGTCATCCTATTGAGTTGGCTTCAAAATCCCTTGGTGTTAAAGAAAGTGATCCTATTGGAAA
CTCTTCTGAAATAATTAACGAGAATGATTCTGATTTGGATTCTCCTTGTTGGAAAGGAAAACTTAGTGCTAATCAATCAACCTGTGAAGTTTCTAGACCT
GATGATTTTCAACATCTTAAAAGTGCTCGAGGAGCTTGCAGCAATTTAAATCCTCTCGCGCCTCATTTTGTCCCTAGCTGTGGCCAACAGAAAGTAAATT
ACCGTGGAACTGAATGTGAAGGAGATGATAGTTTGACTTTCCAGAAGACTGAATCTTCTGCGGTTAGTTTATTCTCCAGAGAACATACACTACAAAAACC
TGGTACAGCTGGATCATCTTCTTCGGATCGGAGCAGTATTACTGAGACACATTGCTCTATTGACAATCATGTCCGCAATGAGGAATATGAGCCACTCACC
AACTCTAGTACTAGCTCCATGCTCAGCTCATCTTGCGTGGTTCAACCATCCATTCTGGAAGATTACTTCACTTCCAATGGCCAGCTTCTGACTAGGCAAA
AGGTTGGAGGATCTGGGAAGGTTATCGAGGATGCAGTACCTAATGGCTCAACTAGTGTGTCTTTGCTTGCAAGCAAACATGTCAGACCCATAAGTACTAG
GCAAATTGACTCTCAACATGTCTCGTTTTCCGCTGTGATGTCTAGGCCAATCTCTTCTAAGTTTTCAACTTTATCAGACTTGCACTCTTCTGCCATAGTT
CAAGATCTTCAAAGTGGAGCTCCAGCAATATCTTGGAGCTCCAATGGTTCCGACATTGCTTCTTTTGAAAGAAGATTCTCACAGAAACTCAATGTTTGTG
CAGCCAAAGGGAATTCTTCCCCTTCATCAGATAGCAATTCTTTGCAAGCTCTAGACTCTGAATCATCGGGAGCTGGTTCAAGTTATTCGCCCTTTAATCA
TGCCTTGTCACAGAACCTAGATTCTGATGGACATGGTGGAGTCAGCAAGAGTGGCATTTTTTGGTATGGTCTAGCCAGTCTAGTAGATGCTGCTGTGGAT
AAAAGGAAGGAAGTTTTCCATGATAAAGTCCTGACAGATAAAAGCAAAGGAAAAATGAGCAAACCTGCCACCCAAGAGGTTATGGAGCCCTTGTCAATGA
CAGTGTCTGAGCTGCAAATCACTTGTCCTAGTCATCCTATTGAGTTGGCTTCAAAATCCCTTGGTGTTAAAGAAAGTGATCCTATTGGAAACTCTTCTGA
AATAATTAACGAGAATGATTCTGATTTGGATTCTCCTTGTTGGAAAGGAAAACTTAGTGCTAATCAATCAACCTGTGAAGTTTCTAGACCTGATGATTTT
CAACATCTTAAAAGTGCTCGAGGAGCTTGCAGCAATTTAAATCCTCTCGCGCCTCATTTTGTCCCTAGCTGTGGCAAACAGAAAGTAAATTACCGTGGAA
CTGAATGTGAAGGAGATGATAGTTTGACTTTCCAGAAGACTGAATCTTCTGCGGTTAGTTTATTCTCCAGAGAACATACACTACAAAAACCTGGTACAGC
TGGATCATCTTCTTCGGATCGGAGCAGTATTACTGAGACACATTGCTCTATTGACAATCATGTCCGCAATAAGGAATATGAGCCACTCACCAACTCTAGT
ACTAGCTCCATGCTCAGCTCATCTTGTTTGGTTCAACCATCCATTCCGGAAGATTACTTCATCTCTAACGGCCAGCTGCTGACTGGGAAAAAAGTTGGAG
GATCTGGGAAGGATATCAAGGATGCAGTATCTAATGGCTCAACTAGTGTGTCTTTGCTTGCAAGCGAACATGTCACCAGTTCATCTTCCTGTAGAGTTGG
TGTTTCTTCTGCTTTAAGTGAAACATATGGGCTTGTAACTAAGCCTTTGTGCACACCTCCAAAATTGGATATTCAAATAGTGGTTAAAACAATAAATCAA
GTGTCAGAATTGCTTATGCAAAACTGCTCATATGATTTAGATTCTCTGAATGAGCATGAACATGATATAATGAAGCGCGTTGTCTGTAATCTTAATGCGT
GTATCAGAAACAGGGTTCGAGAGCATACTCTGACTTCTGAATCAAGTCATCCTCGCGCTTCATATTGTGTTGTGAAATCAGCTGATCTAAACAAGCAGTG
CTGGAACATGGAACTTCAAGCGAAAAGGGCAAAAGCTGTGATGGTTTCCCATGAGCTTGGCCATCAGAATAAAGCATGCAAAGCAGAAGAGTTGTTCTAC
TGA
AA sequence
>Potri.011G149601.1 pacid=42781142 polypeptide=Potri.011G149601.1.p locus=Potri.011G149601 ID=Potri.011G149601.1.v4.1 annot-version=v4.1
MASDTKRGSVSRLSPLAKPFILKTPKNSSSALNSSLQDTSLSPSSSRLAQSFSSFSVEGDSFSYYSLNPSRVYQGSADFGLFNESKSDLDTLLVSKSAEL
GYKAHNSGDHQEILHWKDKHDGFSMSNDDPTKQGSSTEGLKLRAETSDHVCRKFSGISRKDDEVRPKSTRQIDSQHVSFSAVKSRPISSKFSTSSDLHSS
ALVQDPQSGVPAISWSSNDSKIPSFERRFSQQLDACTTKVNSSPSSDSNSLRALDSESSGTGSSYSPFNHALSQTLDSGGHGGVSKSGIFWYSLASLVDA
AVDKRKEVFHDEVLTDKSKVKMSKPATQEVMEPLSMTVSELQITCPSHPIELASKSLGVKESDPIGNSSEIINENDSDLDSPCWKGKLSANQSTCEVSRP
DDFQHLKSARGACSNLNPLAPHFVPSCGQQKVNYRGTECEGDDSLTFQKTESSAVSLFSREHTLQKPGTAGSSSSDRSSITETHCSIDNHVRNEEYEPLT
NSSTSSMLSSSCVVQPSILEDYFTSNGQLLTRQKVGGSGKVIEDAVPNGSTSVSLLASKHVRPISTRQIDSQHVSFSAVMSRPISSKFSTLSDLHSSAIV
QDLQSGAPAISWSSNGSDIASFERRFSQKLNVCAAKGNSSPSSDSNSLQALDSESSGAGSSYSPFNHALSQNLDSDGHGGVSKSGIFWYGLASLVDAAVD
KRKEVFHDKVLTDKSKGKMSKPATQEVMEPLSMTVSELQITCPSHPIELASKSLGVKESDPIGNSSEIINENDSDLDSPCWKGKLSANQSTCEVSRPDDF
QHLKSARGACSNLNPLAPHFVPSCGKQKVNYRGTECEGDDSLTFQKTESSAVSLFSREHTLQKPGTAGSSSSDRSSITETHCSIDNHVRNKEYEPLTNSS
TSSMLSSSCLVQPSIPEDYFISNGQLLTGKKVGGSGKDIKDAVSNGSTSVSLLASEHVTSSSSCRVGVSSALSETYGLVTKPLCTPPKLDIQIVVKTINQ
VSELLMQNCSYDLDSLNEHEHDIMKRVVCNLNACIRNRVREHTLTSESSHPRASYCVVKSADLNKQCWNMELQAKRAKAVMVSHELGHQNKACKAEELFY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G33050 unknown protein Potri.011G149601
[exp]
0 1
AT1G60680 AGD2 NAD(P)-linked oxidoreductase s... Potri.005G052400
[exp]
2.23 0.8451
AT4G18880 HSF AT-HSFA4A ,HSF ... ARABIDOPSIS THALIANA HEAT SHOC... Potri.011G071700
[exp]
3.00 0.8296 HSFA4.1
AT2G39100 RING/U-box superfamily protein... Potri.008G215200
[exp]
4.69 0.8342
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Potri.014G080701
[exp]
8.00 0.7922
AT4G32340 Tetratricopeptide repeat (TPR)... Potri.006G254300
[exp]
9.59 0.8197
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.010G073300
[exp]
12.24 0.8028
AT3G47160 RING/U-box superfamily protein... Potri.001G250800
[exp]
22.80 0.7299
AT1G65770 AMR1 ascorbic acid mannose pathway ... Potri.005G105100
[exp]
24.97 0.7869
AT5G35200 ENTH/ANTH/VHS superfamily prot... Potri.006G065100
[exp]
28.39 0.7857
Potri.018G123400
[exp]
28.46 0.7849

Potri.011G149601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.