Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32960 744 / 0 ATSBT3.3 Subtilase family protein (.1) AT4G10540 744 / 0 Subtilase family protein (.1) AT4G10550 734 / 0 Subtilase family protein (.1.2.3) AT1G32940 729 / 0 ATSBT3.5 Subtilase family protein (.1) AT1G32950 724 / 0 Subtilase family protein (.1) AT4G10510 715 / 0 Subtilase family protein (.1) AT4G10520 707 / 0 Subtilase family protein (.1) AT4G10530 681 / 0 Subtilase family protein (.1) AT4G21650 677 / 0 Subtilase family protein (.1) AT5G11940 652 / 0 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450600 [exp] 1323 / 0 AT1G32960 772 / 0.0 Subtilase family protein (.1) Potri.001G450401 [exp] 831 / 0 AT4G10550 938 / 0.0 Subtilase family protein (.1.2.3) Potri.011G151200 [exp] 831 / 0 AT1G32960 906 / 0.0 Subtilase family protein (.1) Potri.004G161400 [exp] 761 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Potri.011G146300 [exp] 589 / 0 AT4G10550 546 / 0.0 Subtilase family protein (.1.2.3) Potri.001G455800 [exp] 583 / 0 AT4G10550 558 / 0.0 Subtilase family protein (.1.2.3) Potri.001G002200 [exp] 571 / 0 AT4G26330 891 / 0.0 UNFERTILIZED EMBRYO SAC 17, Subtilisin-like serine endopeptidase family protein (.1) Potri.014G171600 [exp] 543 / 0 AT2G04160 986 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Potri.011G050100 [exp] 536 / 1e-180 AT2G04160 784 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035478 [exp] 693 / 0 AT4G10550 659 / 0.0 Subtilase family protein (.1.2.3) Lus10016064 [exp] 535 / 2e-179 AT2G04160 975 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10038772 [exp] 526 / 1e-176 AT5G59810 815 / 0.0 Subtilase family protein (.1) Lus10023048 [exp] 519 / 6e-174 AT5G59810 762 / 0.0 Subtilase family protein (.1) Lus10039087 [exp] 511 / 7e-171 AT2G04160 810 / 0.0 AUXIN-INDUCED IN ROOT CULTURES 3, Subtilisin-like serine endopeptidase family protein (.1) Lus10039086 [exp] 511 / 1e-170 AT5G59810 850 / 0.0 Subtilase family protein (.1) Lus10007083 [exp] 506 / 2e-168 AT5G45650 956 / 0.0 subtilase family protein (.1) Lus10024960 [exp] 502 / 2e-167 AT1G04110 1054 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Lus10020458 [exp] 501 / 1e-166 AT5G45650 940 / 0.0 subtilase family protein (.1) Lus10039085 [exp] 499 / 6e-166 AT5G59810 827 / 0.0 Subtilase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family CL0570 [poplar] [flax] PPP-I PF05922 [poplar] [flax] Inhibitor_I9 Peptidase inhibitor I9
Representative CDS sequence Show only first row Show all	>Potri.011G150900.1 pacid=42782344 polypeptide=Potri.011G150900.1.p locus=Potri.011G150900 ID=Potri.011G150900.1.v4.1 annot-version=v4.1 ATGGACCTCAAATCAAGTAAATGGAGGAGGCCAAGCAAAAATCACTTCTTCACGATCATAGCAATCTTTTTAATTCAACACCAGCTACATGTTTCTGTAA AATGTGCTGAGGCCACAAAGAAAGTGCACATTGTGTATATGGGAGAGAAAGAGCATGAAGATCCAGCAATAACCAAAAAAATTCACTATGAAATGCTGTC GACATTGCTAGGGAGCAAAGAAGCAGCACGAAGTTCAATTCTCTACAGCTATAGGCATGGCTTTTCTGGGTTCGCTGCAAGACTGACAGAGTCTCAGGCA GAAGATATTGCAGAGTTTCCTGGTGTTATCCAAGTAATTCCCAATGGCATTCACAAGCTCCACACAACTAGAAGCTGGGAATTCATTGGTCTCAATCATC ATTCTCCTCAAAATCTGTTAAGGCAAAGCAACATGGGCCAAGGAACTATCATTGGTGTAATTGATTCAGGAGTGTGGCCAGAATCCAAAAGTTTTCATGA TGAAGGCATGGGGCCAGTGCCATCTCATTGGAAAGGAATATGTCAGCAGGGTGAGAGCTTCAACTCATCCAATTGCAACAGAAAGATCATTGGGGCTCGC TGGTTTGTAAAAGGATTTCAGGATCAATTACCTTTTAACACAACTGAAAGCAGGGAATTCATGTCGCCGCGAGATGGCGAGGGCCATGGTAGTCATACAG CTTCCACAGCAGCTGGTAATTTTGTCGAGAAAGTAAGCTATAAAGGACTAGCTGCAGGTTTAGCAAGAGGGGGAGCACCTCTTGCTCACTTGGCAATTTA TAAGGTTTGTTGGAATATTGAAGATGGAGGATGCACTGACGCAGATCTTCTGAAAGCATTTGACAAAGCCATACATGATGGAGTAGATATCCTATCTGTG TCAATTGGCAATAATATTCCTTTGTTCTCCTATGTTGATATGCGCAATTCAATTGCAATTGGCTCCTTCCATGCAACTTTAAATGGGATCTCAGTGATCT GTTCTGCAGGAAATGATGGCCCTATCTCACAGACAGTTGAGAATACAGCACCTTGGCTCATCACTGTTGCAGCCTCTACAATTGACAGGACCTTTCCAAC AGCCATTACACTTGGAAACAACAAAACCCTCTGGGGCCAGTCTATTACTACAGGTCAACATAATCACGGATTTGCAAGCCTTACATACTCCGAGCGCATA CCTTTAAACCCCATGGTTGATTCGGCAAAGGATTGTCAGCCTGGGAGTCTAAATGCAACATTAGCAGCAGGAAAAATCATACTTTGTCTATCAGAATCAA ATACACAGGATATGTTTTCTGCATCAACTTCTGTGTTTGAAGCAGGAGGTGTTGGACTTATATTTGTACAATTTCACCTTGATGGGATGGAGTTATGCAA GATCCCCTGTGTCAAAGTAGATTATGAAGTAGGGACACAGATAGTTTCCTACATCAGAAAAGCCAGGTCTCCAACTGCAAAGCTGAATTTTCCAAAGACT GTTGTTGGCAAAAGAGTTTCTCCGCGACTTGCATCATTTTCCTCCAGAGGACCAAGTTCAATTTCTCCAGAAGTTCTTAAGCCTGACATAGCCGCACCGG GTGTGGACATCTTAGCTGCACATCGACCAGCCAACAAAGACCAAGTTGACTCGTATGCATTCCTATCAGGAACTTCAATGGCTTGTCCCCATGTGACAGG AATTGTAGCTCTCATTAAGTCTTTACATCCGAATTGGTCTCCTGCAGCCATAAGATCAGCACTTGTCACAACTGCTTCCCAAACTGGAACAGATGGAATG AAAATATTTGAGGAGGGCTCAACTAGAAAGGAAGCAGACCCATTTGACATAGGTGGGGGACATGTGAATCCTGAAAAAGCAGTGTATCCAGGGCTTGTTT ACGACACCAACACAAAGGAATATATTCAGTTCCTTTGCTCCATGGGCTACAGTAGTTCATCTGTGACCAGGTTAACCAATGCCACAATCAACTGCATGAA AAAAGCCAATACTAGACTTAACCTCAATCTTCCTTCAATCACCATTCCAAACCTGAAAACAAGTGCAAAAGTGGCAAGAAAGGTGACAAATGTGGGAAAT GTTAATTCAGTGTACAAAGCTATAGTTCAGGCTCCATTTGGCATAAACATGAGAGTTGAGCCTACAACTTTAAGTTTCAACATGAACAACAAAATCCTGT CATACGAAGTTACTTTCTTTTCAACTCAGAAAGTTCAGGGAGGATACAGATTTGGGAGCCTTACATGGACTGACGGCGAGCATTTTGTTCGGAGTCCAAT ATCTGTACGTGCTATGGAGGCATATGCAGATGTGTAA
AA sequence Show only first row Show all	>Potri.011G150900.1 pacid=42782344 polypeptide=Potri.011G150900.1.p locus=Potri.011G150900 ID=Potri.011G150900.1.v4.1 annot-version=v4.1 MDLKSSKWRRPSKNHFFTIIAIFLIQHQLHVSVKCAEATKKVHIVYMGEKEHEDPAITKKIHYEMLSTLLGSKEAARSSILYSYRHGFSGFAARLTESQA EDIAEFPGVIQVIPNGIHKLHTTRSWEFIGLNHHSPQNLLRQSNMGQGTIIGVIDSGVWPESKSFHDEGMGPVPSHWKGICQQGESFNSSNCNRKIIGAR WFVKGFQDQLPFNTTESREFMSPRDGEGHGSHTASTAAGNFVEKVSYKGLAAGLARGGAPLAHLAIYKVCWNIEDGGCTDADLLKAFDKAIHDGVDILSV SIGNNIPLFSYVDMRNSIAIGSFHATLNGISVICSAGNDGPISQTVENTAPWLITVAASTIDRTFPTAITLGNNKTLWGQSITTGQHNHGFASLTYSERI PLNPMVDSAKDCQPGSLNATLAAGKIILCLSESNTQDMFSASTSVFEAGGVGLIFVQFHLDGMELCKIPCVKVDYEVGTQIVSYIRKARSPTAKLNFPKT VVGKRVSPRLASFSSRGPSSISPEVLKPDIAAPGVDILAAHRPANKDQVDSYAFLSGTSMACPHVTGIVALIKSLHPNWSPAAIRSALVTTASQTGTDGM KIFEEGSTRKEADPFDIGGGHVNPEKAVYPGLVYDTNTKEYIQFLCSMGYSSSSVTRLTNATINCMKKANTRLNLNLPSITIPNLKTSAKVARKVTNVGN VNSVYKAIVQAPFGINMRVEPTTLSFNMNNKILSYEVTFFSTQKVQGGYRFGSLTWTDGEHFVRSPISVRAMEAYADV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.011G150900 [exp]	0	1
AT3G14470			NB-ARC domain-containing disea...		Potri.006G273900 [exp]	5.00	0.8045
AT3G18670			Ankyrin repeat family protein ...		Potri.011G016000 [exp]	8.24	0.8532
					Potri.004G011600 [exp]	17.49	0.7907
AT5G07630			lipid transporters (.1)		Potri.003G107501 [exp]	22.60	0.7892
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.004G078200 [exp]	25.92	0.7442
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.003G151300 [exp]	53.72	0.6988
AT5G47800			Phototropic-responsive NPH3 fa...		Potri.016G003700 [exp]	62.45	0.7235
AT2G37630	MYB	AtPHAN, AtMYB91...	ARABIDOPSIS PHANTASTICA-LIKE 1...		Potri.006G085900 [exp]	110.19	0.7352	AS1.1
AT1G69780	HD	ATHB13	Homeobox-leucine zipper protei...		Potri.010G093400 [exp]	197.15	0.7072	ATHB13.3
AT5G51180			alpha/beta-Hydrolases superfam...		Potri.001G079400 [exp]	248.19	0.6973

Compare expression of checked genes

Potri.011G150900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.