Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G14230 568 / 0 unknown protein AT3G04710 68 / 1e-11 TPR10 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) AT5G13530 60 / 6e-09 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT5G57740 57 / 4e-08 XBAT32 XB3 ortholog 2 in Arabidopsis thaliana (.1) AT5G20350 51 / 2e-06 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G14255 50 / 4e-06 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT4G19150 49 / 5e-06 Ankyrin repeat family protein (.1.2) AT5G40160 49 / 6e-06 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT4G27780 49 / 8e-06 ACBP2 acyl-CoA binding protein 2 (.1) AT2G03430 48 / 1e-05 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G333600 [exp] 653 / 0 AT5G14230 975 / 0.0 unknown protein Potri.010G057300 [exp] 636 / 0 AT5G14230 843 / 0.0 unknown protein Potri.005G054800 [exp] 67 / 3e-11 AT3G04710 611 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.013G042300 [exp] 67 / 3e-11 AT3G04710 619 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Potri.010G185200 [exp] 66 / 7e-11 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 62 / 1e-09 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.012G043000 [exp] 61 / 2e-09 AT3G02850 1032 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Potri.011G133700 [exp] 59 / 8e-09 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.011G133300 [exp] 58 / 2e-08 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022339 [exp] 590 / 0 AT5G14230 974 / 0.0 unknown protein Lus10041588 [exp] 581 / 0 AT5G14230 962 / 0.0 unknown protein Lus10015811 [exp] 555 / 0 AT5G14230 727 / 0.0 unknown protein Lus10036990 [exp] 413 / 7e-136 AT5G14230 510 / 5e-174 unknown protein Lus10036989 [exp] 160 / 2e-44 AT5G14230 224 / 2e-68 unknown protein Lus10020272 [exp] 68 / 2e-11 AT5G13530 97 / 9e-21 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10006559 [exp] 66 / 4e-11 AT3G04710 581 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10003260 [exp] 66 / 7e-11 AT3G04710 587 / 0.0 tetratricopeptide repeat 10, ankyrin repeat family protein (.1.2.3) Lus10002621 [exp] 62 / 1e-09 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10039491 [exp] 61 / 4e-09 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] Ank PF13606 [poplar] [flax] Ank_3 Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Potri.011G151300.1 pacid=42780360 polypeptide=Potri.011G151300.1.p locus=Potri.011G151300 ID=Potri.011G151300.1.v4.1 annot-version=v4.1 ATGGCAAGGTACAGTTATGTCTATGGGAGTGAGAGGGATGAGCTTGCAGAGCCATCTCAGAGACTAATAGAGGCTGCTTTGAGTGGAGATGTAGAGTTTG TGACAGAGAGTTTAAAGTCAAAAACAGTAGATGTGAATTATATAGGGACAGTAAACTTGAGAGTGAAATGCATTGAGACAGTGCTGAGAGAGGAAGAGGC TGATGAGATTGAGATTCAGCACAGGGATTTTGTCACTGATGTCACTCCACTTTTTGCTGCTGCTCATTCAGGTCATGTAGAAATTGCCAGGAAATTGCTG TCAGCTGGAGCTGATGTGAACCAGGAATTATTTCGGGGTTTCGCTACCACAGCTGCTGCTCGCGAAGGTCACTGTGTCCTTCTTGACATGCTCCTCAAGG CAGGTGCATCTCAATTAGCTTGTGAAGATGCATTACTTGAAGCTTGCCTTTGTGGTCAAGCTAAAGCTGCAGAATTATTGATCTGCTCAGAGATGACAGG ACCTGATGTGGCGCAACATGCACTTGTATCAGCTAGCTGCCGCGGATTTGTAGATGTTGTAACCACCTTGATCAAGAACGGAGTAGACATAAATTGCACG CGGAGGGTTCTGTTGCAGTCGGTCAAGCCTGCATTGCACGCGAATGTCGATTGTACACCTTTGGTGGCTGCTATCGTGAGCCGACAAGTTTCAGTGGTTA AATATTTGTTAGAGGCAGGTGCAAGAAGCAATTGCTATGTTAGGCTGGGAGCTTGGTCATGGGACATTTTCTCTGGTGAAGAACTGAGAGTAGGTGCATG CTTGGGTGAGCCATATAATGAAGTTTGGTGTGCAGTTGAATATTATGAAGCAAGTGGCCAAATTTTGAACCTTTTGCTTCAGCATCAGATTTCGTTCCTT GAGAGTCAACAGCAAGGCCGGAACCTTCTTTGCCATGCCATCCTTTGCCACAATTCAGATGCCATGGATGTGCTTCTTAATGCTGGTGCTGATGTTGAGT TCTGCTTAAGGACCAAGAAAGGTCACGAATTTCGTCCTATTCATTTGGCTGCTAGAATGGGTTGCCTTCGTATACTAAAACAGGTGATCTTCTATGGTTG TGAAGTTGATTCGAGGACTGAAACTGGCGACACAGCCCTGATGTTGGCGGCCAAATCCGATCAAGCTGATTGCTTCCTTGAGCTTATTGTTTCAGGAGCT GATTTGGGTCTGGTTAACAATAATGGTGAGAGTGCAGTGCACTTGGTGAAAAGAAGTGTGTTTGGATCCTCTTTGGCAGATATTTTTCGACAGGCTATTA CCACTGGAAGAAAAGTCTGCTCCTCCAATCTTGAGGTGTTTTCTTTACTGCACTTCGTTGCTGGAATTGGTAATACAGAGCTTTTACAGATGATCCTTCA ACATTCGACAGAAGACATAAGTAAGCATGATGGTCTTGGTTTGACACCAACTATGGTTGCAGTAAAAGCTGGCCATACTGAGGTCTTCCGGCTCCTGATT GATGCTGGAGCTGACATCAGCGAGAGGAGCAGGGATGGTCAGGCAGTAGTGTCTCTTTTGCAGAATCATGCCTGTTCCAGTGTGAGGACTCGATTTGAAG AGATATTGCTTGATGCTGTGCTTAGTCACAAAGTGACAAGTTATTCTGAGTTTAGAGCTTTGCACTTTGCAGCACATGTTGGCAACTTGCATGCGATAGT TAAGCTATTGGAAATGGGATTCCCTATAAATTCTGTGGATGACAGTGGGCATTCACCCCTCATGCTTGCTGCCAGGGAAGGCCACGCTGATGCCTGTAAG ATATTGTTGCAAAGAGGTGCTCATTGCGGGATTATCAATCAGAGAGGAGAGGCAGCGATATCTCTGGCTAGGAAAAGCACTAAATGTAAGGCTGCAGAGG GAGTGATATTTGATTATTTGGCTCATTCTCACGTGCTACTCGGTGAGGAGCTATGGAAGCACACCCGTGAGGGAAGAGGTTCCCCACATATGAAGGTTGT TCAGATGCTCAAATCTGGCTTGTTAACGTGGGGAAAGTCAAACCGAAGGAATGTGGTGTGTAAGGAAGCAGTGGCAGGACCAAGTCCAACGTTTTTGAAG AATAGGAGAAAGGTAAATGAGGCTGGAGATGAGATGGTTTTCAGGGTGTTAACTGAGACAGGGAGGGAGATTCATTTTGAGGCAAGTTCTGCTTCCAGTT TGAAACTTTGGGTCCATGGCATAAACCTCATTACAAAGGAGGCCACTACCGGTGTTTGGTGA
AA sequence Show only first row Show all	>Potri.011G151300.1 pacid=42780360 polypeptide=Potri.011G151300.1.p locus=Potri.011G151300 ID=Potri.011G151300.1.v4.1 annot-version=v4.1 MARYSYVYGSERDELAEPSQRLIEAALSGDVEFVTESLKSKTVDVNYIGTVNLRVKCIETVLREEEADEIEIQHRDFVTDVTPLFAAAHSGHVEIARKLL SAGADVNQELFRGFATTAAAREGHCVLLDMLLKAGASQLACEDALLEACLCGQAKAAELLICSEMTGPDVAQHALVSASCRGFVDVVTTLIKNGVDINCT RRVLLQSVKPALHANVDCTPLVAAIVSRQVSVVKYLLEAGARSNCYVRLGAWSWDIFSGEELRVGACLGEPYNEVWCAVEYYEASGQILNLLLQHQISFL ESQQQGRNLLCHAILCHNSDAMDVLLNAGADVEFCLRTKKGHEFRPIHLAARMGCLRILKQVIFYGCEVDSRTETGDTALMLAAKSDQADCFLELIVSGA DLGLVNNNGESAVHLVKRSVFGSSLADIFRQAITTGRKVCSSNLEVFSLLHFVAGIGNTELLQMILQHSTEDISKHDGLGLTPTMVAVKAGHTEVFRLLI DAGADISERSRDGQAVVSLLQNHACSSVRTRFEEILLDAVLSHKVTSYSEFRALHFAAHVGNLHAIVKLLEMGFPINSVDDSGHSPLMLAAREGHADACK ILLQRGAHCGIINQRGEAAISLARKSTKCKAAEGVIFDYLAHSHVLLGEELWKHTREGRGSPHMKVVQMLKSGLLTWGKSNRRNVVCKEAVAGPSPTFLK NRRKVNEAGDEMVFRVLTETGREIHFEASSASSLKLWVHGINLITKEATTGVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G14230			unknown protein		Potri.011G151300 [exp]	0	1
					Potri.015G001700 [exp]	3.00	0.9386
AT5G36000			unknown protein		Potri.014G098300 [exp]	3.46	0.9304
AT1G13680			PLC-like phosphodiesterases su...		Potri.004G117500 [exp]	3.74	0.9417
AT4G26640	WRKY	ATWRKY20, WRKY2...	WRKY family transcription fact...		Potri.001G361600 [exp]	12.00	0.8843	Pt-WRK.2
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.004G117200 [exp]	12.24	0.9207
AT1G64660		ATMGL	methionine gamma-lyase (.1)		Potri.003G146600 [exp]	13.03	0.9135
AT5G03170		ATFLA11, FLA11,...	ARABIDOPSIS FASCICLIN-LIKE ARA...		Potri.013G151300 [exp]	13.41	0.9181
					Potri.007G088800 [exp]	13.85	0.9152
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120900 [exp]	14.73	0.9173	Pt-FLA14.3
AT2G20562			unknown protein		Potri.007G136800 [exp]	18.00	0.9136

Compare expression of checked genes

Potri.011G151300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.