Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	CP5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64720 516 / 0 CP5 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT5G54170 402 / 1e-137 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) AT4G14500 386 / 1e-131 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G23080 366 / 4e-124 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) AT3G13062 147 / 1e-39 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) AT1G55960 135 / 2e-35 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G450100 [exp] 692 / 0 AT1G64720 489 / 6e-173 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.012G021400 [exp] 495 / 2e-174 AT1G64720 478 / 2e-168 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.015G005000 [exp] 485 / 3e-170 AT1G64720 474 / 1e-166 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Potri.010G076500 [exp] 369 / 9e-125 AT4G14500 571 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.008G162600 [exp] 360 / 1e-121 AT4G14500 581 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Potri.007G002700 [exp] 125 / 1e-31 AT3G13062 390 / 5e-134 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Potri.014G001100 [exp] 122 / 1e-30 AT3G13062 416 / 3e-144 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033247 [exp] 543 / 0 AT1G64720 523 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10032938 [exp] 426 / 3e-147 AT1G64720 437 / 2e-152 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10008281 [exp] 373 / 3e-129 AT1G64720 374 / 1e-130 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10041166 [exp] 362 / 7e-122 AT4G14500 607 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10021883 [exp] 351 / 7e-118 AT4G14500 605 / 0.0 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10000083 [exp] 137 / 5e-38 AT3G23080 122 / 6e-33 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2) Lus10033334 [exp] 125 / 1e-31 AT1G55960 384 / 5e-132 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1) Lus10034791 [exp] 102 / 2e-23 AT3G13062 346 / 2e-115 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1.2.3) Lus10015566 [exp] 96 / 6e-23 AT1G64720 105 / 5e-27 Polyketide cyclase/dehydrase and lipid transport superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0209 [poplar] [flax] Bet_v_1_like PF01852 [poplar] [flax] START START domain
Representative CDS sequence Show only first row Show all	>Potri.011G151500.1 pacid=42781888 polypeptide=Potri.011G151500.1.p locus=Potri.011G151500 ID=Potri.011G151500.1.v4.1 annot-version=v4.1 ATGGCTTTAGGGTCAGTTTTATTGGAGATTCTGCATAGACCTACAACTGGTCAAGTGTTGAGTGAGCTTTTTATTTTTGCGATTCCTTTGTGGGTTGCTG TTGCTATTGGGGTGCTTGTTGGGTGGGTATGGAAGCCTAAATGGGCTAGCAATTTGAGTAGAGAAATGTTGTTGGATGCTAAACAAGGAGGGGAATTTTC AGCAACATCATTGAGTACCATGATTCCTAGTTTGAATATTTTGAAGTTTCAGTTGCCAAGTTGTGTTTTTCGAGCTGCTGATGATGGTGGGATTCAAACG GACTCTTTCTCTGGGCGACGTACCCTCAATTCTAAATGCAGTTCATCAAAAATGGAAAAGGAAAAACCAAATCTAGTGATGGAAGATGATTTGGAGCATT TGTGCAAGCTTGTTGAAGTGAAAGATGGAGGTCCTGCTTGGATTCAAATGATGGATCGTTCTACACCGACTATGAACTATCAAGCTTGGCGTAGAGATCC TGAGACTGGCCCTCCACAATATCGTACCAGAACTGTTTTTGAGGATGCAACTCCTGAAATGGTGAGGGACTTCTTTTGGGATGATGAATTTCGAGCCAAG TGGGATGACATGCTTGTACATGCTGAAACTTTGGAGGAGTGCCCTACCAGAGGAACCATGGTGGTCCAGTGGGTGCGCAAGTTTCCCTTCTTTTGTAGTG ACAGAGAATACATCATAGGCCGTCGAATTTGGGAGTCAGGTCGATTGTACTATTGTGTTACAAAGGGAGTTCCTTGCTCCTCTGTGCCAAGGCGTAACAA ACCAAGGCGTGTTGATCTGTACTATTCAAGCTGGTGCATTCGTGCAGTTGAATCAAAGAGAGGGGATGGTGAGCTGACTGCCTGTGAGGTGATGCTGTTC CACCATGAGGACATGGGTATTCCTTGGGAAATTGCCAAGCTTGGAGTTCGGCAAGGTATGTGGGGAGCTGTAAAGAAGTTGGAGCCTGGTTTACGTGCAT ATCAGAAACATAGAGCATCTGCCGCACCACTTTCACGAAGTGCTTTCATGGCTCAGATCAACACCAAAGTGAGTGCAGACTACCTGAGATCTTTGGAGAC CAGCATTAGTGATTCATCAGAGATTGAAATTCGAGAAACATCTGAGAAACCTGTTGGGCATAATGTGCCTAAGTTTTTAGTCATTGGTGGGGCTGTCGCT CTTGCTTGTACTCTTGAGCGGGGGCTCTTAACTAAGGCTCTTATATTTGGAGTGGCTAGAAAGTTTGCAATTAGAAGGAGGTCATGA
AA sequence Show only first row Show all	>Potri.011G151500.1 pacid=42781888 polypeptide=Potri.011G151500.1.p locus=Potri.011G151500 ID=Potri.011G151500.1.v4.1 annot-version=v4.1 MALGSVLLEILHRPTTGQVLSELFIFAIPLWVAVAIGVLVGWVWKPKWASNLSREMLLDAKQGGEFSATSLSTMIPSLNILKFQLPSCVFRAADDGGIQT DSFSGRRTLNSKCSSSKMEKEKPNLVMEDDLEHLCKLVEVKDGGPAWIQMMDRSTPTMNYQAWRRDPETGPPQYRTRTVFEDATPEMVRDFFWDDEFRAK WDDMLVHAETLEECPTRGTMVVQWVRKFPFFCSDREYIIGRRIWESGRLYYCVTKGVPCSSVPRRNKPRRVDLYYSSWCIRAVESKRGDGELTACEVMLF HHEDMGIPWEIAKLGVRQGMWGAVKKLEPGLRAYQKHRASAAPLSRSAFMAQINTKVSADYLRSLETSISDSSEIEIRETSEKPVGHNVPKFLVIGGAVA LACTLERGLLTKALIFGVARKFAIRRRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.011G151500 [exp]	0	1	CP5.1
AT1G30135	ZIM	TIFY5A, JAZ8	jasmonate-zim-domain protein 8...		Potri.011G083900 [exp]	4.47	0.9203
AT5G04760	MYB		Duplicated homeodomain-like su...		Potri.001G219100 [exp]	8.48	0.9118
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.003G182200 [exp]	10.95	0.9132	WRKY40.2
AT1G19180	ZIM	TIFY10A, JAZ1	jasmonate-zim-domain protein 1...		Potri.001G166200 [exp]	12.80	0.9116
AT3G18360			VQ motif-containing protein (....		Potri.015G046600 [exp]	15.32	0.9095
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Potri.014G046900 [exp]	15.87	0.9024	ERF11,Pt-EREBP1.3
AT3G29000			Calcium-binding EF-hand family...		Potri.008G087900 [exp]	16.52	0.9031
AT1G72450	ZIM	TIFY11B, JAZ6	TIFY DOMAIN PROTEIN 11B, jasmo...		Potri.003G068900 [exp]	18.49	0.9094
AT4G37640		ACA2	calcium ATPase 2 (.1)		Potri.007G055500 [exp]	18.54	0.9026	Pt-ACA2.1
AT1G01260	bHLH	bHLH013, INU4	basic helix-loop-helix (bHLH) ...		Potri.002G172101 [exp]	20.83	0.8938

Compare expression of checked genes

Potri.011G151500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.