Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15850 425 / 1e-148 JB67, FADB, ADS3, FAD5 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) AT3G15870 377 / 7e-130 Fatty acid desaturase family protein (.1) AT1G06080 369 / 1e-127 ADS1 delta 9 desaturase 1 (.1) AT2G31360 358 / 3e-123 ADS2 16:0delta9 desaturase 2 (.1) AT1G06120 350 / 6e-120 Fatty acid desaturase family protein (.1) AT1G06090 342 / 7e-117 Fatty acid desaturase family protein (.1) AT1G06100 340 / 5e-116 Fatty acid desaturase family protein (.1) AT1G06350 327 / 5e-111 Fatty acid desaturase family protein (.1) AT1G06360 321 / 8e-109 Fatty acid desaturase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G151700 [exp] 734 / 0 AT3G15850 423 / 7e-148 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Potri.011G152100 [exp] 729 / 0 AT3G15850 427 / 2e-149 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011488 [exp] 439 / 6e-154 AT3G15850 461 / 5e-163 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10023128 [exp] 416 / 1e-144 AT3G15850 458 / 1e-161 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10017773 [exp] 359 / 2e-123 AT3G15850 380 / 4e-132 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10001279 [exp] 358 / 6e-123 AT3G15850 387 / 2e-134 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041042 [exp] 358 / 9e-123 AT3G15850 374 / 3e-129 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009469 [exp] 354 / 3e-121 AT3G15850 391 / 4e-136 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10009470 [exp] 351 / 9e-121 AT3G15850 358 / 7e-124 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10041043 [exp] 352 / 3e-120 AT3G15850 372 / 1e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10006180 [exp] 350 / 2e-119 AT3G15850 370 / 5e-128 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1) Lus10019726 [exp] 282 / 1e-93 AT3G15850 319 / 1e-108 FATTY ACID DESATURASE B, fatty acid desaturase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00487 [poplar] [flax] FA_desaturase Fatty acid desaturase
Representative CDS sequence Show only first row Show all	>Potri.011G151800.1 pacid=42780700 polypeptide=Potri.011G151800.1.p locus=Potri.011G151800 ID=Potri.011G151800.1.v4.1 annot-version=v4.1 ATGGCTTTGATGACATCTCCATTGACCAAATCCAAACCTTGCCTTTTTCTGCCTTTTACCCATGCTAAGAAACTGGGTTCTCCACCTGCTATACTCCTAA ATTATGGTCACTATAACCCCAAGTTCCTACCACTAACAACCAACAAATGCAAAAAAGAAAAATTATCAAGTCTTTTGGATGCTTCAAATAAGAATTATAG CAGTACAAAAAAAGCACTACAAGTAGTGGCTGATGCTGATAATGCCCCTCTATCAGAGGCCGAGCCTAGGAACCTCGGGAAAATCTTTCTGTCAGATGTG GTGGTGAGGAGAAGAAGGCAGGTATTTTGGGGCAGGAAATGGAATTCATCAGATATAGCCAATGCTGCTATAGTTTCGTCAGTGCATTTTCTATCTTTGT TTGCACCTTTTTATTTCACTTGGCCTGCATTTTGGGTTACCATTGGCCTCGGTATTGTCACTGGACTTCTAGGTATCACTCTTTCTTTCCATAGGAATCT TTCTCATAGGAGTTTCAAGCTTCCAAAATGGCTCGAGTATTTTTTTGCATACTGTGGGGTTCAAGCTCTTCAAAGGGATCCTATTTTTTGGGTTAGCACT CATAGACACCACCACCAGTTTTGTGATTCTGAGAGAGACCCGCATAGCCCTACTGAAGGGTTTTGGTTTAGTCACATCACTTGGCTCTTTGACAATAATT ATATTACTGAAAAGTGTGGAGGGCAAAACAATGTTGGGGATTTAGAGAAGCAACCCTTTTACAAGTTCATGCAAAACACGTACTTTCTACATCCAATTGC GCTTGGAGTTCTGCTATATGCAGTGGGAGGATTTCCCTTCCTTGTATGGGGAATGGGTGTGAGAACCGCACTGGCTTTGCACATCACTTGGCTAATAAAC TCAGCTTCTCATTTATGGGGAAAGCGAGCGTGGAACACCGGCGACTTGTCTAGGAACAATTGGTGGCTTGCGTTGCTTACTTTTGGAGAAGGTTGGCATA ATAATCACCATGCTTTTGAATACTCAGCCAGGCATGGCCTGGAATGGTGGCAGATTGACATGACTTGGTATGTTGTAAGGTTTCTTCAAGCTATTGGACT GGCAACAGATGTGAAGCTGCCATCGGAAGTTCAAAAGCAAAGGATGGCTTTCAACAATTGA
AA sequence Show only first row Show all	>Potri.011G151800.1 pacid=42780700 polypeptide=Potri.011G151800.1.p locus=Potri.011G151800 ID=Potri.011G151800.1.v4.1 annot-version=v4.1 MALMTSPLTKSKPCLFLPFTHAKKLGSPPAILLNYGHYNPKFLPLTTNKCKKEKLSSLLDASNKNYSSTKKALQVVADADNAPLSEAEPRNLGKIFLSDV VVRRRRQVFWGRKWNSSDIANAAIVSSVHFLSLFAPFYFTWPAFWVTIGLGIVTGLLGITLSFHRNLSHRSFKLPKWLEYFFAYCGVQALQRDPIFWVST HRHHHQFCDSERDPHSPTEGFWFSHITWLFDNNYITEKCGGQNNVGDLEKQPFYKFMQNTYFLHPIALGVLLYAVGGFPFLVWGMGVRTALALHITWLIN SASHLWGKRAWNTGDLSRNNWWLALLTFGEGWHNNHHAFEYSARHGLEWWQIDMTWYVVRFLQAIGLATDVKLPSEVQKQRMAFNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Potri.011G151800 [exp]	0	1
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Potri.011G151700 [exp]	1.00	0.9902
AT5G54010			UDP-Glycosyltransferase superf...		Potri.006G179700 [exp]	5.83	0.9867
AT1G65880		BZO1	benzoyloxyglucosinolate 1 (.1)		Potri.017G138350 [exp]	7.54	0.9851
AT5G39240			unknown protein		Potri.004G119600 [exp]	10.72	0.9831
AT5G18060			SAUR-like auxin-responsive pro...		Potri.009G126300 [exp]	11.48	0.9816
AT4G33800			unknown protein		Potri.002G117600 [exp]	11.83	0.9810
AT1G14430			glyoxal oxidase-related protei...		Potri.001G083600 [exp]	14.69	0.9800
AT4G24350			Phosphorylase superfamily prot...		Potri.013G080300 [exp]	14.83	0.9798
AT1G34640			peptidases (.1)		Potri.002G096700 [exp]	15.00	0.9800
AT3G60520			unknown protein		Potri.014G058300 [exp]	15.03	0.8597

Compare expression of checked genes

Potri.011G151800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.