Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G32860 501 / 2e-177 Glycosyl hydrolase superfamily protein (.1) AT5G42100 486 / 2e-171 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT2G27500 423 / 2e-147 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G30080 382 / 1e-130 Glycosyl hydrolase superfamily protein (.1) AT4G18340 368 / 2e-125 Glycosyl hydrolase superfamily protein (.1) AT3G15800 352 / 4e-119 Glycosyl hydrolase superfamily protein (.1) AT2G26600 340 / 1e-114 Glycosyl hydrolase superfamily protein (.1.2) AT2G05790 315 / 8e-104 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 311 / 2e-102 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 309 / 1e-101 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G449100 [exp] 662 / 0 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.009G163700 [exp] 439 / 9e-154 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G202400 [exp] 431 / 1e-150 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 393 / 2e-135 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G084900 [exp] 387 / 5e-133 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 376 / 1e-128 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 365 / 2e-124 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 347 / 2e-116 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 336 / 3e-112 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033244 [exp] 544 / 0 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10008277 [exp] 536 / 0 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 520 / 0 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 510 / 0 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10004869 [exp] 441 / 5e-154 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10020618 [exp] 440 / 4e-153 AT2G27500 494 / 5e-175 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10028122 [exp] 394 / 7e-136 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 379 / 3e-130 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 372 / 5e-128 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 375 / 9e-128 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Potri.011G152400.4 pacid=42782329 polypeptide=Potri.011G152400.4.p locus=Potri.011G152400 ID=Potri.011G152400.4.v4.1 annot-version=v4.1 ATGGAGTACTGTAGATTTTACTACTGTGCTTCACTTATCCTTTCCATTTCAGGTTTGGTATTTCCTGTAATGGTGGGTTCTATTGGGATCAATTATGGTC AGATTGCTAACAATCTTCCAGCACCAGACAATGTAGTCCCTTTAGTGAAATCAATTGGGGCAACAAAAGTGAAACTTTATGATGCAGATCCAAGAGTGCT TAAAGCATTTGCTAATACAGGAGTGGAATTCATAGTTGGTCTTGGAAATGAGTACTTGTCAAAGATGAGAGATCCAGAAAAGGCACAGGCTTGGGTTAAA ACAAATGTTCAAGCTTATTTACCAGCAACAAAAATCACTTGCATCACAATTGGCAATGAAGTCTTAACCTTTAATGACACAGGTCTTACAGACAACCTCA TTCCTGCAATGCAGAACATTCACACAGCTTTAGTAAATTTGGGACTTGATAAGCAGGTCTCAGTTACTACAGCTCATTCTTTGGCAATTCTTGAAGTGTC TTATCCACCTTCAGCTGGATCTTTTCGAAAAGATCTTGTGGGGTGCATCACCCCCATATTGAATTTCCATGCCAAGACTAACTCGCCATTTTTAATCAAT GCATATCCCTTTTTTGCATACAAGTCTAATCCCAAACAAATTTCTTTAGATTTTGTGCTGTTTCAGCCAAATCAAGGGATTGTTGATTCGAAAAGCAATT TCCATTATGATAACATGTTGTTTGCTCAAATTGATGCTGTGCATTCTGCATTAGCAAGTTTAGGATACAGTAAATTGCCAGTTCATATATCAGAAACTGG CTGGCCATCGAAAGGGGATGCAGATGAAGTAGGAGCAACCCTCGAAAATGCGAAGAAATATAATGGGAATTTGCTTAAGATTATTTGTCAAAGGAAGGGA ACTCCAATGAGGCCTAATACAGATTTCAACATTTATGTTTTTGCTTTGTTTAATGAAAACATGAAACCTGGACCAGCTTCTGAGAGGAATTATGGGTTGT TTAAGCCTGATGGAACACCGGCATATTCGCTTGGAATTAGTGGAACAGATGCTGTTAGTGCTAACACCACCACCACCACTGGTGCTCCTGCGCCTCCGTC ACCGGATAGTTCTTCAACTGGGTATTTGTCAATTTCTGCTGCTGTAAAGGAAAGATGTTGTAGTTGCATAGGCCAACTGTTGTTTCCACTGCTGTTGTTG AACTACTTGGCCTTTAGACTAGCATTTTGA
AA sequence Show only first row Show all	>Potri.011G152400.4 pacid=42782329 polypeptide=Potri.011G152400.4.p locus=Potri.011G152400 ID=Potri.011G152400.4.v4.1 annot-version=v4.1 MEYCRFYYCASLILSISGLVFPVMVGSIGINYGQIANNLPAPDNVVPLVKSIGATKVKLYDADPRVLKAFANTGVEFIVGLGNEYLSKMRDPEKAQAWVK TNVQAYLPATKITCITIGNEVLTFNDTGLTDNLIPAMQNIHTALVNLGLDKQVSVTTAHSLAILEVSYPPSAGSFRKDLVGCITPILNFHAKTNSPFLIN AYPFFAYKSNPKQISLDFVLFQPNQGIVDSKSNFHYDNMLFAQIDAVHSALASLGYSKLPVHISETGWPSKGDADEVGATLENAKKYNGNLLKIICQRKG TPMRPNTDFNIYVFALFNENMKPGPASERNYGLFKPDGTPAYSLGISGTDAVSANTTTTTGAPAPPSPDSSSTGYLSISAAVKERCCSCIGQLLFPLLLL NYLAFRLAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G32860			Glycosyl hydrolase superfamily...		Potri.011G152400 [exp]	0	1
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.003G161700 [exp]	1.73	0.9222	CYP51G5,CYP51.1
AT2G25270			unknown protein		Potri.006G258700 [exp]	3.74	0.9075
AT3G48540			Cytidine/deoxycytidylate deami...		Potri.015G096400 [exp]	4.24	0.8627
AT4G23740			Leucine-rich repeat protein ki...		Potri.003G136100 [exp]	5.74	0.9057
AT3G47830			DNA glycosylase superfamily pr...		Potri.015G071300 [exp]	7.21	0.9047
AT2G15730			P-loop containing nucleoside t...		Potri.009G105200 [exp]	8.36	0.8772
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	10.95	0.8969
AT3G48200			unknown protein		Potri.012G087400 [exp]	13.67	0.8643
AT2G36830		TIP1;1, GAMMA-T...	TONOPLAST INTRINSIC PROTEIN 1;...		Potri.006G121700 [exp]	13.74	0.8825	Pt-TIP2.7
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	15.58	0.8791

Compare expression of checked genes

Potri.011G152400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.