Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10570 1106 / 0 UBP9 ubiquitin-specific protease 9 (.1) AT4G10590 1100 / 0 UBP10 ubiquitin-specific protease 10 (.1.2) AT1G32850 1021 / 0 UBP11 ubiquitin-specific protease 11 (.1) AT2G40930 812 / 0 PDE323, ATUBP5, UBP5 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) AT5G22030 660 / 0 UBP8 ubiquitin-specific protease 8 (.1.2) AT4G31670 95 / 7e-20 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 94 / 1e-19 UBP19 ubiquitin-specific protease 19 (.1.2) AT2G32780 92 / 7e-19 ATUBP1 ubiquitin-specific protease 1 (.1) AT1G04860 89 / 1e-17 ATUBP2, UBP2 ubiquitin-specific protease 2 (.1) AT4G24560 86 / 6e-17 UBP16 ubiquitin-specific protease 16 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G449000 [exp] 1714 / 0 AT4G10570 1097 / 0.0 ubiquitin-specific protease 9 (.1) Potri.006G033800 [exp] 876 / 0 AT2G40930 1231 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.016G031900 [exp] 855 / 0 AT2G40930 1204 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Potri.001G214800 [exp] 694 / 0 AT5G22030 1086 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.006G201100 [exp] 647 / 0 AT5G22030 815 / 0.0 ubiquitin-specific protease 8 (.1.2) Potri.016G067400 [exp] 138 / 6e-35 AT4G10590 239 / 1e-70 ubiquitin-specific protease 10 (.1.2) Potri.006G266100 [exp] 95 / 5e-20 AT5G10790 628 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G017000 [exp] 95 / 5e-20 AT5G10790 615 / 0.0 ubiquitin-specific protease 22 (.1) Potri.018G123200 [exp] 95 / 6e-20 AT5G10790 465 / 2e-158 ubiquitin-specific protease 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017343 [exp] 1266 / 0 AT4G10570 1047 / 0.0 ubiquitin-specific protease 9 (.1) Lus10033243 [exp] 1252 / 0 AT4G10570 1028 / 0.0 ubiquitin-specific protease 9 (.1) Lus10001661 [exp] 1237 / 0 AT4G10570 1032 / 0.0 ubiquitin-specific protease 9 (.1) Lus10027289 [exp] 843 / 0 AT2G40930 1239 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10008276 [exp] 838 / 0 AT4G10570 702 / 0.0 ubiquitin-specific protease 9 (.1) Lus10038994 [exp] 803 / 0 AT2G40930 1188 / 0.0 PIGMENT DEFECTIVE EMBRYO 323, ubiquitin-specific protease 5 (.1) Lus10013369 [exp] 697 / 0 AT5G22030 1065 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10008452 [exp] 680 / 0 AT5G22030 1028 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10021253 [exp] 626 / 0 AT5G22030 814 / 0.0 ubiquitin-specific protease 8 (.1.2) Lus10013599 [exp] 619 / 0 AT5G22030 811 / 0.0 ubiquitin-specific protease 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.011G152500.6 pacid=42780804 polypeptide=Potri.011G152500.6.p locus=Potri.011G152500 ID=Potri.011G152500.6.v4.1 annot-version=v4.1 ATGACGATGATTGACTCAAGGTGTTTAATGGAGAACGGAGGAGGAGGTGGAGGTGAAGGAAGTTGCTTGCCGTGTACACCTGAAGAAGAGAAGCAGATCG TTGAGGAATTGAATCGTGAAGCTGAACGTGATTTGAAAGAAGGGAATTTGTATTTTGTTGTTTCTTCTAGGTGGTTCTCAAAATGGGAGAGTTATGTTGG TCGTGGTGGTGTTGACAACTTGGATAATGGGAAATCTTCCGAGCCTCAAGATTTGGATGTTGAAAGGCCTGGTCCAATTGATAACTCTGATATAATTGAG GGCAGAAGTAGTAATGAGGGTGATGAGCTAGAGCTTGTTAGAACGCTGTTGGAAGGAAGGGACTATGTATTAGTTCCTAAGAAAGTTTGGGAGAAGCTTG TCCAGTGGTACAAAGGAGGACCAGCGTTACCAAGAAAGATGATCTCTCAGGGTGTTTTTAATAAAAAGCAGTTCAACGTGGAGGTTTATCCACTTTGCCT CAAGTTAATTGACTCCAGAGATGACAGTGAATCAACTATACAGATAAGCAAAAAGGCTTCTCTGCATGAGTTATATGAGAAGGTTTGCTCAGCTAGAGGA GTAGAGCGTGAAAAGGCCTCTATATGGGACTTCTTCAATAAGCAAAAGAGTTCACAGTTGAGCATTTCAAACCAAACCTTGGAGGAGTTACACTTGCAGA TGGATCAAGAGATTCTTTTGGAGCTGAAAGTTGATAGTTCTCCTTCTCAATCTGGAAAGGATTCAACAGGGAATGAGTTAGCATTGGTAGCCTTGGAACC TCCAAGGTCCCCCATGTCGATTGCAGGAGGGCCTGCCATGTCAAATGGTCACTCAAGTAGTTATAGCTTGAACTTATGGCCAGGAAGTGCCGTAAACTCA TCATTCAAAGATATGGACGACGGATTTGGTGTGCATAGCTCTGTTAGGAGAGTAGAAAAGGGAGGTTTGGCAGGACTGCAGAATATGGGAAATACTTGCT TTATGAACAGTGCTTTACAATGCTTACTCCACACACCCCAACTTGTTGAATATTTCTTGCAAGATTACTCTGAGGAAATCAACACACAGAATCCTTTAGG AATGCATGGTGAACTTGCACTTGCATTTGGTGACTTGTTGAGGAAACTGTGGTCCTCAGGCCGGACCGCGATTGCACCACGTGTGTTTAAGGGAAAACTA GCGCTATTTGCTCCTCAATTCAGTGGTTATAATCAACATGATTCTCAAGAACTTCTTGCCTTTTTGCTGGATGGGCTGCATGAAGATTTGAATCGTGTCA AGCAAAAGCCTTATATTGAAATGAAGGATTGGAGTGGTGAACCAGACGAGGAAGTTGCAGACGAGTGTTGGAGAAATCACAAGACTCGGAATGACTCAGT TATTGTGGATGTTTGTCAAGGTCAATATAAGTCGACGCTGGTTTGCCCAATTTGCAGTAAAATTTCAATTACTTTTGATCCCTTCATGTACTTGTCTTTG CCACTGCCTTCAACTGTCACTCGGATAATGACAGTAACAGTGTTTCATGGTGATGGAAGTGGTCTTCCAATGCCTTGCACTGTTTCAGTGCTGAAACATG GTAATTGTAGAGATCTTGGTCAAGCACTGGACTCTGCATGCGGTTTGAAAAGTGGAGAAAGCCTTCTGCTGGCAGAAGTATATGATCACAAGATTTATAG GATGTTGGAAAATCCTTTTGAACCATTGGTCTCTATAAAGGATGAAGACCATATTGTGGCCTATCGGTTTTGTGGAAAAGGGGCAGGAAGAAAGAAGCTG GAGATTGTTCATAGGGATAAGTGCACTCCAGATATACTGAAGGGCAATGTTGGGAAGTATTTTGGCACACCTCTGATAACTTATATGGACGATGACTCAC CAAGTGGAGCTGATATCTATTTGGCTGCTTCCAGACTGCTCTCGCCTTTGAAACGAGCATGTGCCTCTACTATGGCTCATAGTGGCGAAGAGAATGGTTT TCTTTTGGAGGCTAATGGTGAGACATCAAGTGGCTGCAATGGTCAATGTGAACCTAGGGACCAATCCATGGGCAACACAGAACTAGAGGGTACATCTAGC CAGGAATTGCCTTTCCAGCTCTTTTTGACTGATGATCGGTATTTAAGCTGCAAGCCAATATTTAAGGATTCTGTCATAAAATCTGGGAATCGTATAAAGG TTGTCTTTGAGTGGACTGAGAAAGAACAGAAATTATACGATTCCAGCAATCTAAAGGATCTCCCAGAGGTTTATCACAAGACTGGCTATAGAGCAAAGAA AACCCGGCAGGAAGCTGTCTCTTTATTTTCGTGCCTGGAGGCATTCTTGACAGAAGAACCTTTAGGGCCTGATGACATGTGGTATTGTCCTAGTTGTAAA GAACATAGGCAAGCCACCAAGAAACTGGACCTGTGGATGTTGCCAGATATTCTTGTTTTTCACTTGAAACGGTTCTCATACAGCAGATACCTGAAGAACA AACTGGATACTTTTGTGGATTTCCCCGTTCACAATCTTGATTTGAGCAAATATGTGAAACAAAAGGATGGACAATCATACACGTATGAGTTATATGCCAT CAGCAACCATTATGGTGGTCTAGGTGGTGGGCACTATACTGCATTTGCCAAGTTGATTGATGATAATAGATGGTACAGTTTCGACGATAGTCGAGTTTCT CCAGTCAATGAAGCTGACATCAAGACCTCAGCTGCTTATGTCTTATTCTACCGAAGGGTTAAGACTGAATCGAAGGCCGAATTGGGAGAGACATCACAAG CTCATGCAGGTCTTTAA
AA sequence Show only first row Show all	>Potri.011G152500.6 pacid=42780804 polypeptide=Potri.011G152500.6.p locus=Potri.011G152500 ID=Potri.011G152500.6.v4.1 annot-version=v4.1 MTMIDSRCLMENGGGGGGEGSCLPCTPEEEKQIVEELNREAERDLKEGNLYFVVSSRWFSKWESYVGRGGVDNLDNGKSSEPQDLDVERPGPIDNSDIIE GRSSNEGDELELVRTLLEGRDYVLVPKKVWEKLVQWYKGGPALPRKMISQGVFNKKQFNVEVYPLCLKLIDSRDDSESTIQISKKASLHELYEKVCSARG VEREKASIWDFFNKQKSSQLSISNQTLEELHLQMDQEILLELKVDSSPSQSGKDSTGNELALVALEPPRSPMSIAGGPAMSNGHSSSYSLNLWPGSAVNS SFKDMDDGFGVHSSVRRVEKGGLAGLQNMGNTCFMNSALQCLLHTPQLVEYFLQDYSEEINTQNPLGMHGELALAFGDLLRKLWSSGRTAIAPRVFKGKL ALFAPQFSGYNQHDSQELLAFLLDGLHEDLNRVKQKPYIEMKDWSGEPDEEVADECWRNHKTRNDSVIVDVCQGQYKSTLVCPICSKISITFDPFMYLSL PLPSTVTRIMTVTVFHGDGSGLPMPCTVSVLKHGNCRDLGQALDSACGLKSGESLLLAEVYDHKIYRMLENPFEPLVSIKDEDHIVAYRFCGKGAGRKKL EIVHRDKCTPDILKGNVGKYFGTPLITYMDDDSPSGADIYLAASRLLSPLKRACASTMAHSGEENGFLLEANGETSSGCNGQCEPRDQSMGNTELEGTSS QELPFQLFLTDDRYLSCKPIFKDSVIKSGNRIKVVFEWTEKEQKLYDSSNLKDLPEVYHKTGYRAKKTRQEAVSLFSCLEAFLTEEPLGPDDMWYCPSCK EHRQATKKLDLWMLPDILVFHLKRFSYSRYLKNKLDTFVDFPVHNLDLSKYVKQKDGQSYTYELYAISNHYGGLGGGHYTAFAKLIDDNRWYSFDDSRVS PVNEADIKTSAAYVLFYRRVKTESKAELGETSQAHAGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	0	1
AT4G19950			unknown protein		Potri.007G105600 [exp]	1.73	0.8181	Pt-ORF.7
AT5G52580			RabGAP/TBC domain-containing p...		Potri.006G066300 [exp]	3.00	0.8004
AT5G41990		EIP1, ATWNK8, W...	EMF1-Interacting Protein 1, wi...		Potri.001G085500 [exp]	3.74	0.8014	WNK8.2
AT3G21650			Protein phosphatase 2A regulat...		Potri.014G157000 [exp]	6.70	0.7838
AT3G14750			unknown protein		Potri.001G382700 [exp]	7.48	0.7520
AT3G18860			transducin family protein / WD...		Potri.009G112184 [exp]	10.24	0.7653
AT1G53570		MAPKKK3, MAP3KA	MAP KINASE KINASE KINASE 3, mi...		Potri.005G062500 [exp]	12.96	0.7192	Pt-MAP3.1
AT5G03080			Phosphatidic acid phosphatase ...		Potri.016G086700 [exp]	13.41	0.7378
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Potri.002G110900 [exp]	15.87	0.6946	ZIM.2
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Potri.009G063800 [exp]	16.70	0.7637

Compare expression of checked genes

Potri.011G152500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.