Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G10610 401 / 5e-140 ATRBP37, RBP37, CID12 RNA-BINDING PROTEIN 37, CTC-interacting domain 12 (.1.2) AT1G32790 398 / 2e-138 CID11 CTC-interacting domain 11 (.1.2) AT3G49390 368 / 1e-126 CID10 CTC-interacting domain 10 (.1.2) AT3G14450 340 / 3e-116 CID9 CTC-interacting domain 9 (.1) AT1G53650 328 / 9e-112 CID8 CTC-interacting domain 8 (.1.2) AT5G24440 306 / 1e-102 CID13 CTC-interacting domain 13 (.1) AT4G34110 54 / 1e-07 PABP2, PAB2, ATPAB2 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) AT2G16940 53 / 2e-07 Splicing factor, CC1-like (.1.2.3) AT5G10350 51 / 2e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G51120 52 / 3e-07 PABN1, ATPABN1 polyadenylate-binding protein 1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G448800 [exp] 465 / 4e-165 AT1G32790 363 / 2e-125 CTC-interacting domain 11 (.1.2) Potri.015G005400 [exp] 394 / 1e-136 AT1G32790 415 / 5e-145 CTC-interacting domain 11 (.1.2) Potri.012G022000 [exp] 361 / 2e-123 AT1G32790 428 / 4e-150 CTC-interacting domain 11 (.1.2) Potri.001G377500 [exp] 339 / 4e-116 AT3G14450 424 / 2e-150 CTC-interacting domain 9 (.1) Potri.011G095800 [exp] 338 / 1e-115 AT3G14450 391 / 3e-137 CTC-interacting domain 9 (.1) Potri.010G209701 [exp] 64 / 6e-11 AT3G55340 265 / 2e-82 phragmoplastin interacting protein 1 (.1) Potri.004G177000 [exp] 61 / 5e-10 AT2G16940 538 / 0.0 Splicing factor, CC1-like (.1.2.3) Potri.001G304000 [exp] 61 / 6e-10 AT4G34110 837 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Potri.009G099300 [exp] 59 / 3e-09 AT4G34110 850 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033242 [exp] 426 / 1e-149 AT1G32790 436 / 1e-153 CTC-interacting domain 11 (.1.2) Lus10008275 [exp] 428 / 5e-149 AT1G32790 437 / 8e-153 CTC-interacting domain 11 (.1.2) Lus10008851 [exp] 388 / 3e-134 AT3G49390 427 / 7e-150 CTC-interacting domain 10 (.1.2) Lus10032942 [exp] 375 / 6e-129 AT3G49390 421 / 2e-147 CTC-interacting domain 10 (.1.2) Lus10032941 [exp] 353 / 6e-121 AT1G32790 383 / 4e-133 CTC-interacting domain 11 (.1.2) Lus10027886 [exp] 61 / 5e-10 AT4G34110 922 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10002835 [exp] 61 / 7e-10 AT4G34110 918 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10034466 [exp] 58 / 8e-09 AT2G16940 569 / 0.0 Splicing factor, CC1-like (.1.2.3) Lus10010370 [exp] 57 / 1e-08 AT4G34110 845 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1) Lus10010042 [exp] 57 / 1e-08 AT4G34110 865 / 0.0 ARABIDOPSIS POLY\(A\) BINDING 2, poly(A) binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0221 [poplar] [flax] PF07145 [poplar] [flax] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Potri.011G152700.4 pacid=42782018 polypeptide=Potri.011G152700.4.p locus=Potri.011G152700 ID=Potri.011G152700.4.v4.1 annot-version=v4.1 ATGGTTGTTGGAGATAATGCTAGTGTTGATTTGGGGAATATTAGCGTGGACTCAAATGTTTCATCATCATCAAATGATCAGGATCATCACAATCACAACA ACAATGCTCCGATTCAGCCTCTGTACATGAAGGTTGCCCAGGTGGGCCATCATCAGGCTCATCACCACGATCATCATCATCAGCAGAGATCAGATGGTGG GGAGAGTTACAAGAGGGAGATTCGAGAGTTGCAGGAGTTATTCTCTAAGTTAAACCCCATGGCTGCTGAGTTTGTGCCTCCTTCACATTCCAACAACAAC AATTTTGGTAGAGTTAATGGGCTTAGTGGATTCAATGGAGTTAATGGGGGATTTTATGGCAACAACCATATCAGCAGCAGCAGCAGCACCACCACCACCA ACAACAACAACCTCAACTTGGTTGTGAATGGAAATGGCTTCGACAGAAGTGGACAAGTTAATGGAAATGCTGCTAGAAGGAAGAAAAATTATGGTCAGGT GAAACGTAGAATCAGTAGCAGGACAAGTATGGCTCAACAGGAGGAGATAGTTCGCAGGACTGTGTATGTCTCTGACATTGATCAACAGGTCACTGAAGAG CAACTAGCAGCTCTATTTATTAATTGTGGACAGGTTGTTGACTGTCGTATCTGTGGTGATCCCAAATCTGTACTTCGTTTTGCCTTTATTGAGTTCACTG ATGAGGAAGGTGCTCAGGCTGCCTTGAGTCTGTCTGGGACAATGCTTGGATACTACCCTGTGAAAGTGCTGCCCTCCAAAACAGCTATTGCACCGGTTAA CCCAACCTTTTTGCCCAGGAATGATGATGAGCGTGAAATGTGCGCAAGAACTATCTACTGTACAAATATTGATAGGAATCTTACTCAAGCAAATATTAAA CTCTTTTTTGAATCACTCTGCGGAGAGGTGTATCACCTGAGGCTGCTAGGAGATCATCATCATCCTACTCGTATTGCTTTTGTGGAGTTTGTTATGGCTG AAAGTGCAATAGCTGCTCTCAACTGTAGTGGTGTGGTTCTGGGTTCATTGCCGATAAGGGTGAGTCCATCAAAGACACCTGTGCGACCACGTGGTCCTCG CATAACTGTGCTTTGA
AA sequence Show only first row Show all	>Potri.011G152700.4 pacid=42782018 polypeptide=Potri.011G152700.4.p locus=Potri.011G152700 ID=Potri.011G152700.4.v4.1 annot-version=v4.1 MVVGDNASVDLGNISVDSNVSSSSNDQDHHNHNNNAPIQPLYMKVAQVGHHQAHHHDHHHQQRSDGGESYKREIRELQELFSKLNPMAAEFVPPSHSNNN NFGRVNGLSGFNGVNGGFYGNNHISSSSSTTTTNNNNLNLVVNGNGFDRSGQVNGNAARRKKNYGQVKRRISSRTSMAQQEEIVRRTVYVSDIDQQVTEE QLAALFINCGQVVDCRICGDPKSVLRFAFIEFTDEEGAQAALSLSGTMLGYYPVKVLPSKTAIAPVNPTFLPRNDDEREMCARTIYCTNIDRNLTQANIK LFFESLCGEVYHLRLLGDHHHPTRIAFVEFVMAESAIAALNCSGVVLGSLPIRVSPSKTPVRPRGPRITVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G10610		ATRBP37, RBP37,...	RNA-BINDING PROTEIN 37, CTC-in...		Potri.011G152700 [exp]	0	1
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.014G193300 [exp]	4.24	0.7724
AT1G10200	LIM	WLIM1, SF3	WLIM1, GATA type zinc finger t...		Potri.015G072400 [exp]	4.58	0.7442
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	7.61	0.7716
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Potri.012G086700 [exp]	12.72	0.6463	WNK3.2
AT3G44150			unknown protein		Potri.006G201600 [exp]	13.85	0.6529
AT3G42050			vacuolar ATP synthase subunit ...		Potri.019G047800 [exp]	16.24	0.7305
AT1G55840			Sec14p-like phosphatidylinosit...		Potri.001G369400 [exp]	18.97	0.6710
AT5G47530			Auxin-responsive family protei...		Potri.006G015000 [exp]	20.61	0.6390
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Potri.009G134200 [exp]	24.59	0.6714
AT5G20090			Uncharacterised protein family...		Potri.015G092500 [exp]	25.98	0.6834

Compare expression of checked genes

Potri.011G152700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.