Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G00820 332 / 2e-107 IQD17 IQ-domain 17 (.1) AT1G01110 325 / 6e-105 IQD18 IQ-domain 18 (.1.2) AT4G10640 225 / 8e-68 IQD16 IQ-domain 16 (.1) AT5G03040 92 / 1e-19 IQD2 IQ-domain 2 (.1.2.3) AT3G52290 86 / 7e-18 IQD3 IQ-domain 3 (.1) AT2G26180 85 / 2e-17 IQD6 IQ-domain 6 (.1) AT3G49260 85 / 3e-17 IQD21 IQ-domain 21 (.1.2.3) AT3G59690 79 / 3e-15 IQD13 IQ-domain 13 (.1) AT1G72670 78 / 3e-15 IQD8 IQ-domain 8 (.1) AT3G49380 77 / 6e-15 IQD15 IQ-domain 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G448100 [exp] 643 / 0 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.002G178500 [exp] 406 / 6e-136 AT4G00820 458 / 1e-156 IQ-domain 17 (.1) Potri.014G104600 [exp] 395 / 6e-132 AT4G00820 432 / 2e-146 IQ-domain 17 (.1) Potri.015G005900 [exp] 280 / 1e-87 AT4G00820 277 / 1e-86 IQ-domain 17 (.1) Potri.012G022500 [exp] 279 / 3e-87 AT1G01110 242 / 2e-73 IQ-domain 18 (.1.2) Potri.006G131100 [exp] 114 / 6e-27 AT5G03040 369 / 1e-123 IQ-domain 2 (.1.2.3) Potri.010G218100 [exp] 107 / 1e-24 AT5G03040 323 / 8e-106 IQ-domain 2 (.1.2.3) Potri.016G086300 [exp] 107 / 2e-24 AT5G03040 372 / 6e-125 IQ-domain 2 (.1.2.3) Potri.006G226600 [exp] 103 / 2e-23 AT2G26180 386 / 1e-131 IQ-domain 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008269 [exp] 314 / 3e-100 AT1G01110 317 / 8e-102 IQ-domain 18 (.1.2) Lus10010104 [exp] 290 / 5e-91 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10012608 [exp] 284 / 9e-89 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10033237 [exp] 218 / 8e-66 AT1G01110 183 / 8e-55 IQ-domain 18 (.1.2) Lus10041419 [exp] 96 / 4e-21 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10036508 [exp] 95 / 2e-20 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10025593 [exp] 87 / 1e-17 AT3G59690 498 / 1e-172 IQ-domain 13 (.1) Lus10019916 [exp] 86 / 1e-17 AT5G03040 410 / 9e-141 IQ-domain 2 (.1.2.3) Lus10014870 [exp] 86 / 4e-17 AT2G26180 249 / 5e-74 IQ-domain 6 (.1) Lus10026486 [exp] 85 / 5e-17 AT5G03040 414 / 4e-140 IQ-domain 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif CL0220 [poplar] [flax] PF13178 [poplar] [flax] DUF4005 Protein of unknown function (DUF4005)
Representative CDS sequence Show only first row Show all	>Potri.011G153400.1 pacid=42781599 polypeptide=Potri.011G153400.1.p locus=Potri.011G153400 ID=Potri.011G153400.1.v4.1 annot-version=v4.1 ATGGGAAAGAAGGGCGGTACCTCATGGTTGACCATCGTGAAAAGAGCATTCAGGTCTCCAAGTAAAGAGAATGAGAAAAAGAGTAGCAGAAGGAGAGAAG AACATGACCAGGAAGAGGAAGAAAAGAAAAGAGAGAAAAGAAGATGGCTTTTTAGAAAGACGTCGTCCAGCACTAACCATGTCCCAGTTCAACGATGTGA AGAAAATATTGCAATAACGAACACAACAAGTACTACCACTGCACCCTTGAGTCCTACTTTGGATGCTGAGAAAAAACTTGCAGTGGCAGTGGCAGCAGCC ACAGCTGCGGCAGCTGATGCTGCAGCTGTAACAGCCCAAGCAGCAGTAGAGATTGTTAGACTCACTAGACCAGCTTCCATCTTTGTTAGAGCTAAACTCT GGGCTGCTATTGCCATTCAAACGGCCTTTAGAGGCTACCTAGCAAGGAGAGCTCTACGTGCACTGAAAGGGCTAGTGAAGCTTCAAGCTTTGGTAAGAGG ACACAATGTAAGAAAGCAAGCGAAGCTAACACTTCAATACATGCAAGCTTTAGCTCGAGTACAAGATCGAGTCCGTGACCACCGAGCAAGGCTTTCACAT GAAGGGAGCAGAAGGTCCATGTTTTCTGAGACTAATAGCTCATGGGAGTTCAAATATCTCCACGAAATCCGTGAGAGGAAGTCCATGTCGAGAGATGTAA GCTCTGTTCTAGATGATTGGGATGATCGTCCACGCACCAATGAAGAGATTGAAGCCATGGTGGAAAGTAAGAAGGAAGCTGCATTAAAACGTGAAAAGGC CCTGGCTTATGCTTTCTCTAGCCAGATATGGAGGTCTAGAAGGAACCCATCAGCAGGGGATGAAAAGGAACTTGAAGACAGAACAGGATGGCTTGATCGC TGGATGGCAACAAAGCAATGGGAGGCAAGTAGCAGGGCAATAACAGATAGAAAAGACAACAGTATAAAGACTGTAGAAATGGACACATCTAGACCATTTT CATATTCTACTACAACTTCTTCTCAAAGATTACAAAGCCAAAATCACCTACAAAAACAAACCCCCAGACATTCTATTGCTTCTCCTCTCCATAGATCACA CTCCAGTCTTTCTCTCCACCAATCGCCAATCACACCCTCTCCTTGCAAACCCAGGCCCCTTCAAGTACGTTCAGCCAGTCCAAGATGCCTAAAAGAAGAA AAAAAATGCTACTCAGCAGCACATACTCCAAGCTTGAGCTCTAGATATTTCATGAACAATGGTATTGGTCGACATGGAATGGTGGGTGCAAGTGGGGGCA CTGCTACAATCTTGCCAAACTACATGGCAGCAACTGAGTCAGCAAAGGCTCGTGTTAGGCCACAGAGTGCACCAAGGCAGAGACCATCGACACCTGAGAG AGAACGTGGTGGATCGGTTGCGAAGAAACGTCTGTCATTCCCAGTTCAAGATCATGGACCACATGGAAATGGTGCTGGCATTATTGACTACAGTAGCAAT AGGAGCTTCAGTCAGAATTTAAGGAGCCCTAGCTTCAAGAGTGTGCATGGTTGCCACTTTGGAATGGGAGAGCAATCAAATTATTTCTCATGTTATAATG AGAGCATTGGTGGAGAAATATCTCCTTGTTCCACGACTGACCTTAGGTGGTTAAAATAA
AA sequence Show only first row Show all	>Potri.011G153400.1 pacid=42781599 polypeptide=Potri.011G153400.1.p locus=Potri.011G153400 ID=Potri.011G153400.1.v4.1 annot-version=v4.1 MGKKGGTSWLTIVKRAFRSPSKENEKKSSRRREEHDQEEEEKKREKRRWLFRKTSSSTNHVPVQRCEENIAITNTTSTTTAPLSPTLDAEKKLAVAVAAA TAAAADAAAVTAQAAVEIVRLTRPASIFVRAKLWAAIAIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKLTLQYMQALARVQDRVRDHRARLSH EGSRRSMFSETNSSWEFKYLHEIRERKSMSRDVSSVLDDWDDRPRTNEEIEAMVESKKEAALKREKALAYAFSSQIWRSRRNPSAGDEKELEDRTGWLDR WMATKQWEASSRAITDRKDNSIKTVEMDTSRPFSYSTTTSSQRLQSQNHLQKQTPRHSIASPLHRSHSSLSLHQSPITPSPCKPRPLQVRSASPRCLKEE KKCYSAAHTPSLSSRYFMNNGIGRHGMVGASGGTATILPNYMAATESAKARVRPQSAPRQRPSTPERERGGSVAKKRLSFPVQDHGPHGNGAGIIDYSSN RSFSQNLRSPSFKSVHGCHFGMGEQSNYFSCYNESIGGEISPCSTTDLRWLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G00820		IQD17	IQ-domain 17 (.1)		Potri.011G153400 [exp]	0	1
AT5G06710	HD	HAT14	homeobox from Arabidopsis thal...		Potri.018G133100 [exp]	2.00	0.8760
AT5G57420	AUX_IAA	IAA33	indole-3-acetic acid inducible...		Potri.018G092300 [exp]	4.24	0.8541
AT2G27140			HSP20-like chaperones superfam...		Potri.009G153100 [exp]	4.47	0.8655
AT2G17080			Arabidopsis protein of unknown...		Potri.002G012400 [exp]	8.36	0.8427
					Potri.001G388450 [exp]	9.48	0.8470
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Potri.007G017500 [exp]	10.39	0.7520
AT1G20190		ATHEXPALPHA1.14...	EXPANSIN 11, expansin 11 (.1)		Potri.005G244100 [exp]	13.11	0.8503	Pt-ATEXPA11.1,PtrEXPA18
AT1G19020			unknown protein		Potri.015G070700 [exp]	14.42	0.8176
AT1G45688			unknown protein		Potri.007G045000 [exp]	14.49	0.8263
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	17.54	0.8214

Compare expression of checked genes

Potri.011G153400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.