Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G17540 388 / 1e-131 HXXXD-type acyl-transferase family protein (.1) AT3G03480 355 / 6e-119 CHAT acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) AT5G41040 236 / 1e-72 HXXXD-type acyl-transferase family protein (.1.2) AT5G63560 221 / 5e-67 HXXXD-type acyl-transferase family protein (.1) AT3G48720 214 / 2e-64 DCF DEFICIENT IN CUTIN FERULATE, HXXXD-type acyl-transferase family protein (.1) AT1G27620 194 / 1e-56 HXXXD-type acyl-transferase family protein (.1) AT3G62160 173 / 6e-49 HXXXD-type acyl-transferase family protein (.1) AT2G40230 170 / 8e-48 HXXXD-type acyl-transferase family protein (.1) AT1G03390 167 / 1e-46 HXXXD-type acyl-transferase family protein (.1) AT1G28680 161 / 2e-44 HXXXD-type acyl-transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G447500 [exp] 849 / 0 AT5G17540 380 / 2e-128 HXXXD-type acyl-transferase family protein (.1) Potri.001G447300 [exp] 840 / 0 AT5G17540 382 / 2e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G447700 [exp] 831 / 0 AT5G17540 383 / 1e-129 HXXXD-type acyl-transferase family protein (.1) Potri.001G448000 [exp] 732 / 0 AT5G17540 400 / 4e-136 HXXXD-type acyl-transferase family protein (.1) Potri.019G043600 [exp] 497 / 2e-174 AT5G17540 545 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074500 [exp] 493 / 5e-173 AT5G17540 547 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.013G074400 [exp] 475 / 7e-166 AT5G17540 518 / 0.0 HXXXD-type acyl-transferase family protein (.1) Potri.001G447900 [exp] 464 / 2e-164 AT3G03480 166 / 2e-48 acetyl CoA:(Z)-3-hexen-1-ol acetyltransferase (.1) Potri.013G074300 [exp] 470 / 5e-164 AT5G17540 497 / 7e-175 HXXXD-type acyl-transferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020331 [exp] 468 / 9e-163 AT5G17540 504 / 4e-177 HXXXD-type acyl-transferase family protein (.1) Lus10020332 [exp] 410 / 1e-139 AT5G17540 464 / 3e-161 HXXXD-type acyl-transferase family protein (.1) Lus10005660 [exp] 404 / 1e-137 AT5G17540 461 / 4e-160 HXXXD-type acyl-transferase family protein (.1) Lus10005661 [exp] 400 / 9e-137 AT5G17540 412 / 7e-142 HXXXD-type acyl-transferase family protein (.1) Lus10020330 [exp] 398 / 3e-135 AT5G17540 436 / 2e-150 HXXXD-type acyl-transferase family protein (.1) Lus10005659 [exp] 395 / 1e-134 AT5G17540 406 / 6e-139 HXXXD-type acyl-transferase family protein (.1) Lus10026872 [exp] 322 / 7e-108 AT5G17540 341 / 2e-115 HXXXD-type acyl-transferase family protein (.1) Lus10005663 [exp] 274 / 9e-90 AT5G17540 295 / 4e-98 HXXXD-type acyl-transferase family protein (.1) Lus10043189 [exp] 249 / 1e-77 AT5G41040 635 / 0.0 HXXXD-type acyl-transferase family protein (.1.2) Lus10032554 [exp] 244 / 6e-76 AT5G41040 640 / 0.0 HXXXD-type acyl-transferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [poplar] [flax] CoA-acyltrans PF02458 [poplar] [flax] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Potri.011G153500.1 pacid=42780788 polypeptide=Potri.011G153500.1.p locus=Potri.011G153500 ID=Potri.011G153500.1.v4.1 annot-version=v4.1 ATGGCAGCATCTACTCCCTTATCATTTGCGGTCCGACGATGCGAACCTGAATTGGTTGCCCCAGCTAAAGCCACTCCTCATGAACTCAGACAGCTTTCTG ATATTGATCGCCAATTATACCTCCAATTCCAATCACCGAATTACAACTTGTATGCACACAATCCCTCAATGCAAGGGAAAGATCCCGTGAAGGTAATAAA AGAGGCGATTGCACAAACACTTGTTTATTATTACCCTTTTGCTGGTAGGATTAGACAAGGGCCAGACAATAAGCTTATAGTTGAATGTACTGGGGAGGGT GTTTTGTTCATCGAAGCCGATGCCGATGCTACAGTTGAGCAGTTTGGTGATCCAATTCCATCTCCATTCCCTTGCTTTGAAGAACTTCTATACAACGTCC CAGGATCTGCAGGGATCCACAATACCCCATTATTGTCTTTTCAGGTGACACGCTTGAAGTGTGGTGGTTTTGTACTTGCCTATCGTCTGAATCACCTAAT GAGTGATGCTCTTGGCATAGTTCAGCTATTGAGTGCCATAGGGGAGATTGCACGAGGTGCGCAAGCCCCTTCAATTCTACCTGTGTGGCAAAGGGAACTT CTCTGTGCTAGGAATCCACCACGCGTTACTCGCAGACACAGTGAATATGGTAATGATGGTCCAGTTGTTGTTGGTCCTACAACCAACGTTCCTGAATTCC ACGGCGAAGTTTACGATGTAGCCCACCGTAGTTTCGTTCTTAACCGCAAAGAATTATCAAACATTCGTAGATGGATTCCTTCTCATTTACACCCTTGTTC AAATTTTGAGGTCATAAGTGCATGCTTATGGAGATGCTATGCCATAGCATCTCAAGCAAACCCTAATGAGCAGATGCGCATGCAATTGCTTGTCAATGCA CGTTCCAAGTTCAACCCACCATTACCAAAAGGATATTACGGTAACGTGCTAGCTTTGCCAGCAGCTGTAACAAATGCTAAGAACCTTTGTTTAAACTCAT TAGGGTATGCAATGGAGTTGATAAGGAATGCCAAGAATGCAATAACTGAGGAGTACATGAGATCATTGGCTGATCTAATAGAGATCACCAAAGGCCAGCC TATCGGGTTACAGTCATATGTTGTGTCAGACATAACAAGTATTGGGTTTGATCAAGTGGATTGTGGGTGGGATAAGCCAGTTTATGCTGGGCCAGCTAAG GCCATGCCTGATGAAATTTCTATTGCTGGAACCTATTTTCTGCCCTATAGATTCAAGAACGGAGAGCGAGGGGTTATGCTGTTAGTTTCCTTACGCGCAC CAGTTATGGAGAGATTTGCAGTCCTCTTAGAGGAATTGGCAAGGAATGATCCAGAAAGAAGCCAAGGACAACAAGAAATGATACTAAGCTCCCTTTAA
AA sequence Show only first row Show all	>Potri.011G153500.1 pacid=42780788 polypeptide=Potri.011G153500.1.p locus=Potri.011G153500 ID=Potri.011G153500.1.v4.1 annot-version=v4.1 MAASTPLSFAVRRCEPELVAPAKATPHELRQLSDIDRQLYLQFQSPNYNLYAHNPSMQGKDPVKVIKEAIAQTLVYYYPFAGRIRQGPDNKLIVECTGEG VLFIEADADATVEQFGDPIPSPFPCFEELLYNVPGSAGIHNTPLLSFQVTRLKCGGFVLAYRLNHLMSDALGIVQLLSAIGEIARGAQAPSILPVWQREL LCARNPPRVTRRHSEYGNDGPVVVGPTTNVPEFHGEVYDVAHRSFVLNRKELSNIRRWIPSHLHPCSNFEVISACLWRCYAIASQANPNEQMRMQLLVNA RSKFNPPLPKGYYGNVLALPAAVTNAKNLCLNSLGYAMELIRNAKNAITEEYMRSLADLIEITKGQPIGLQSYVVSDITSIGFDQVDCGWDKPVYAGPAK AMPDEISIAGTYFLPYRFKNGERGVMLLVSLRAPVMERFAVLLEELARNDPERSQGQQEMILSSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.011G153500 [exp]	0	1
AT5G61820			unknown protein		Potri.015G108700 [exp]	1.00	0.9440
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.011G131051 [exp]	2.82	0.8921
AT3G03480		CHAT	acetyl CoA:(Z)-3-hexen-1-ol ac...		Potri.001G447832 [exp]	3.46	0.8913
AT2G25735			unknown protein		Potri.006G244200 [exp]	7.07	0.8500
AT1G03230			Eukaryotic aspartyl protease f...		Potri.019G064700 [exp]	7.34	0.8753
AT1G62500			Bifunctional inhibitor/lipid-t...		Potri.003G111300 [exp]	10.00	0.8270
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Potri.013G149000 [exp]	11.48	0.8394
AT1G19020			unknown protein		Potri.015G070700 [exp]	11.95	0.8390
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Potri.010G207800 [exp]	12.44	0.8118
AT5G56970		ATCKX3, CKX3	cytokinin oxidase 3 (.1)		Potri.006G152500 [exp]	13.85	0.7663	CKX3.1

Compare expression of checked genes

Potri.011G153500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.