Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G79160 124 / 5e-35 unknown protein AT1G16500 115 / 2e-31 unknown protein AT5G06270 41 / 8e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G446800 [exp] 306 / 6e-107 AT1G79160 113 / 7e-31 unknown protein Potri.007G067300 [exp] 134 / 4e-39 AT1G79160 164 / 3e-50 unknown protein Potri.005G096800 [exp] 123 / 2e-34 AT1G79160 209 / 7e-68 unknown protein Potri.004G200300 [exp] 39 / 0.0004 AT5G06270 71 / 7e-17 unknown protein Potri.006G206000 [exp] 38 / 0.0008 AT5G06270 108 / 8e-32 unknown protein Potri.016G073400 [exp] 38 / 0.0009 AT5G06270 115 / 2e-34 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031179 [exp] 112 / 2e-30 AT1G79160 197 / 5e-63 unknown protein Lus10031755 [exp] 110 / 9e-30 AT1G79160 201 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G153600.1 pacid=42781450 polypeptide=Potri.011G153600.1.p locus=Potri.011G153600 ID=Potri.011G153600.1.v4.1 annot-version=v4.1 ATGGCAGCAGATGTCAGCTCAATCGTGAACAGTACTAGAAATTCAGAGATTTTGATCACAAAAGACTTGCTTGGAGGGTTTTCAAAGGTTGCTAACAAAG ATTTGGATCTGGACTTACAAGTCACAAAAACTTGGGATGCGCCTCATGATTTTAAGTCTTCAGGGAAGGTATACTCACAGAGATGTAATTCTGTAAGCTC ACCATTACCATCCCCTAACAGCATGAAGCACCACAAACTGAGAACAGCCCAAGAATCAGAGGTTCAAGATTCTAAGTTTCCACCATTAAAGTTCTTGGAA GAAAGTTGCCTGGAATTGAAACTTGTACCGTCGAGTCACTGTCAAAGTGTGTGCACGCTTGACAAGGTAAAATCTGCTTTGCAAAGAGCAGAGAAAGAGA CCATGACTAAGAAGAGATCTCCTCCACCACCAAACCCACAAACCAGTGACATCAAAGAAGACAGAAATGGCACTGCATCCTCTTCAACAGGAGTGTTCGC TGCTGCTTGTCCTGGTTGCTTGCTCTATGTGATTACTTTGAAAACAAATCCCAAGTGCCCTAGTTGCAACTCTATCGTCCCATCTCCATCGGCTACAAAG AAGCCCAGAATTGACCTCAATGCTTCACTTTGA
AA sequence Show only first row Show all	>Potri.011G153600.1 pacid=42781450 polypeptide=Potri.011G153600.1.p locus=Potri.011G153600 ID=Potri.011G153600.1.v4.1 annot-version=v4.1 MAADVSSIVNSTRNSEILITKDLLGGFSKVANKDLDLDLQVTKTWDAPHDFKSSGKVYSQRCNSVSSPLPSPNSMKHHKLRTAQESEVQDSKFPPLKFLE ESCLELKLVPSSHCQSVCTLDKVKSALQRAEKETMTKKRSPPPPNPQTSDIKEDRNGTASSSTGVFAAACPGCLLYVITLKTNPKCPSCNSIVPSPSATK KPRIDLNASL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G79160			unknown protein		Potri.011G153600 [exp]	0	1
AT4G17940			Tetratricopeptide repeat (TPR)...		Potri.002G256900 [exp]	1.00	0.9691
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Potri.012G031100 [exp]	4.24	0.9684	Pt-SIGE.3
AT5G05220			unknown protein		Potri.013G090200 [exp]	5.00	0.9597
AT5G14570		ATNRT2.7	high affinity nitrate transpor...		Potri.001G348300 [exp]	5.29	0.9577
AT3G54680			proteophosphoglycan-related (....		Potri.013G120700 [exp]	6.00	0.9310
AT3G11670		DGD1	DIGALACTOSYL DIACYLGLYCEROL DE...		Potri.016G070200 [exp]	6.32	0.9274	Pt-DGD1.3
AT3G18950			Transducin/WD40 repeat-like su...		Potri.004G148400 [exp]	6.92	0.9610
AT5G62680			Major facilitator superfamily ...		Potri.001G351200 [exp]	10.09	0.9443
AT5G16340			AMP-dependent synthetase and l...		Potri.013G096200 [exp]	11.22	0.9595
AT3G05880		RCI2A	RARE-COLD-INDUCIBLE 2A, Low te...		Potri.013G001600 [exp]	13.41	0.9448	Pt-RCI2.1

Compare expression of checked genes

Potri.011G153600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.