Plant FIBer expression Database

Potri.011G153800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G443025
[exp]
464 / 6e-163 ND /
Potri.015G084300
[exp]
69 / 6e-12 ND /
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10008068
[exp]
518 / 2e-177 ND /
Lus10019466
[exp]
67 / 2e-11 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02833 DHHA2 DHHA2 domain
Representative CDS sequence
>Potri.011G153800.6 pacid=42780619 polypeptide=Potri.011G153800.6.p locus=Potri.011G153800 ID=Potri.011G153800.6.v4.1 annot-version=v4.1
ATGAGACCTCCCAAAGCAAAGCCTCAGGATTCGTACATTCGTGGCCGAGAGAATCCATACTTTGATGGTCTGTTAAGAGGTAACGACACTGGCAGCCAGA
ATATTTCTCCGTCAACATCAGATATTGGTGATTTGAGAGGAATAAGTTTTTCAGATATTCCTGGAAAGTTTAAGGACTTGCCAGTAAAGGATTCAGTCTC
AGACATTCTCGAACCCTTCGAGCAGACTACATTTTGGACTTTGTCAAAAGTTCCTAGATCAACATCATTCGAATCCCAAAGTTCTCAATCTGATATGAGC
TTTGATTTAGATGGTTCAAATCATTTAGTGAAACAATCCAGTCCTGGTACCTTTGAAACAACCGAAGAACACCAAGTTGTACCTTTCCTACCAAGACCTG
TGATTGAAAAATCATTTGTTCTGAACAAAAGGAAATCAAACCTGTCAAATATTCCACTTCCTCAGTCGGCCGCAACATTTTATAATGGATTTTCCCCACA
ATTTGAGATTTTGGAATCATGTGAAAGCACCATGAAGCTAAATTTATACTTGAAAGCCAGAAAGGATGATGTGAGTGCTGGTGTTCCTGGAAAATTCTTG
CATGCTGTAATTGGTCAAGATGTCTCAGACGTAGGATCCATCGCTTCGACCATCATGTATGCTCTCTACTTGAATGAGACAATCAAAAGTGACCAGTTCT
GCACTGTACCTATCATTAATATGAAGAGGACAGACCTAAGTTCTCATGCAGAACTAAAATGGTTGCTGGATTCTTGTCATATTGATGTGCCATCCTTACT
TTTCGTAGATGAGATTGATCTCTCATACTTTGATCTGTTCGGGTGTCTCAAGCTAGTGCTAGTGAATGGACACAAGCTCCCAACAAGACAAGAGGCATTA
AAGGAAGCGGTCGTTGAAGTATTCAATTGCAGAAAGGGTGAATCTGTGTATCCTTGGGTGGAGACTGTTACTGTTGATCAGGACTGCTCATGCTGTAGCC
TTATTGCTGAAAAGTTATTCCTGACTGCACCTGAGCTTTTGGCAGGGCAAAGATTCAGTAAACTTTTGTTAGCTGGCATCCTAATGGATACTGGAAACCT
TACTAGTCCTCATTGCACTACCAAAGACAAGTACATGGCTACTTTGTTACTCAATGGCGCTGGTCGCTTCGGATCCAATGGTCTTTATCAAATAATGAGA
TACAAAATGTATGATATCTCTGATCTTAAAGCAGTTGACATATTGCGCAAGGAGTTTAAAAAGTGGACAAGAGGAGGTAAGCCAGATCCTACTGGTTCAA
GATTACTGGTGTCAAATATTGGGATGAGTTCCATTGGCATTTCATTGGAGCAGTTTCTTGCTCATGAACGTTCTTCGAAAGAAGAAATCAAGTATTTCCA
GCAGTCGGAGAAGCTTCGGTTACTCATGATTGTATCAGGATATTATGATGCTGAGAAGAACTTCAAGAGGGAGATACTGGTCTCTGCTGAATCTATGGAG
CTTATGAGGAATCTGCTATCCTTCTTCAGTTCAAATGCCTCCCATCTGCCACTCAAAGCTATGCATAGACCAGGTCTCAGAGATGACATGAAGGCATTTG
AGATTGACAAAGCTACATCAAGAAAGACCATCGAGCGTCTCTTGGAAGAATTTGGTGGGGCATCAAAAGGCTAA
AA sequence
>Potri.011G153800.6 pacid=42780619 polypeptide=Potri.011G153800.6.p locus=Potri.011G153800 ID=Potri.011G153800.6.v4.1 annot-version=v4.1
MRPPKAKPQDSYIRGRENPYFDGLLRGNDTGSQNISPSTSDIGDLRGISFSDIPGKFKDLPVKDSVSDILEPFEQTTFWTLSKVPRSTSFESQSSQSDMS
FDLDGSNHLVKQSSPGTFETTEEHQVVPFLPRPVIEKSFVLNKRKSNLSNIPLPQSAATFYNGFSPQFEILESCESTMKLNLYLKARKDDVSAGVPGKFL
HAVIGQDVSDVGSIASTIMYALYLNETIKSDQFCTVPIINMKRTDLSSHAELKWLLDSCHIDVPSLLFVDEIDLSYFDLFGCLKLVLVNGHKLPTRQEAL
KEAVVEVFNCRKGESVYPWVETVTVDQDCSCCSLIAEKLFLTAPELLAGQRFSKLLLAGILMDTGNLTSPHCTTKDKYMATLLLNGAGRFGSNGLYQIMR
YKMYDISDLKAVDILRKEFKKWTRGGKPDPTGSRLLVSNIGMSSIGISLEQFLAHERSSKEEIKYFQQSEKLRLLMIVSGYYDAEKNFKREILVSAESME
LMRNLLSFFSSNASHLPLKAMHRPGLRDDMKAFEIDKATSRKTIERLLEEFGGASKG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G153800
[exp]
0 1
AT5G19840 2-oxoglutarate (2OG) and Fe(II... Potri.002G047875
[exp]
3.46 0.8123
AT1G75750 GASA1 GAST1 protein homolog 1 (.1.2) Potri.005G239100
[exp]
4.89 0.7947 Pt-GASA1.2
AT5G56170 LLG1 LORELEI-LIKE-GPI-ANCHORED PROT... Potri.019G095200
[exp]
7.74 0.7657
AT1G17810 BETA-TIP beta-tonoplast intrinsic prote... Potri.018G152100
[exp]
13.41 0.7192 Pt-BETA-TIP.1
AT1G68920 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) ... Potri.008G113200
[exp]
16.91 0.7022
AT1G06620 2-oxoglutarate (2OG) and Fe(II... Potri.017G135800
[exp]
23.76 0.7501
AT3G51840 ATG6, ATSCX, AC... acyl-CoA oxidase 4 (.1) Potri.006G101800
[exp]
26.98 0.7218 Pt-ACX4.1
AT4G21780 unknown protein Potri.011G000400
[exp]
32.17 0.7331
Potri.016G124300
[exp]
40.24 0.6599
AT2G31980 AtCYS2 PHYTOCYSTATIN 2 (.1) Potri.002G235800
[exp]
42.57 0.5732

Potri.011G153800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.