Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G19490 1172 / 0 ATVPS54 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442900 [exp] 1690 / 0 AT4G19490 1144 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038410 [exp] 1329 / 0 AT4G19490 1263 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023394 [exp] 1274 / 0 AT4G19490 1179 / 0.0 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10023393 [exp] 459 / 8e-153 AT4G19490 490 / 3e-165 ARABIDOPSIS THALIANA VPS54 HOMOLOG, VPS54 (.1.2) Lus10038409 [exp] 113 / 7e-27 AT1G32540 179 / 2e-55 lsd one like 1 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07928 [poplar] [flax] Vps54 Vps54-like protein CL0295 [poplar] [flax] Vps51 PF10475 [poplar] [flax] Vps54_N Vacuolar-sorting protein 54, of GARP complex
Representative CDS sequence Show only first row Show all	>Potri.011G154000.6 pacid=42780999 polypeptide=Potri.011G154000.6.p locus=Potri.011G154000 ID=Potri.011G154000.6.v4.1 annot-version=v4.1 ATGGATTCTCTCCCTTCCTTCAATTCCAATTCCAATTCCAATTCCAATTCCCCTCTCAAAAAATCACTATCTGATACCACAAATATCCAAAACCTCTCCT CCATCCTCAACAACCCTCACTCCTTCAAATCCACCGATCCCTCCGCCTGGCTCGGCTGGTGGTCCTCCTCCACCACTCTAGCTCCTCCTGATTTCTCCCC CATACTCCCCAAACAACCGCCACCTGATATTTCCCGATCGGATTTCCTCCCCTACTTATCTGCTGTCTCCGACACCTACTCCCGCTTCGAAGACATCAAA AACCACTCTAAAAATAACGACCTTGATCAAGAATCGAAGTCGGATTTGGCGGATGCGGAGTCCAATTCGGATTTGGCTGCTGTAGGGCAAGGGGAGGCGC TGGTTGCGTGTTTGAGGGAAGTTCCGGCACTGTATTTTAAAGAGGATTTTGCGTTGGAAGACGGGCCCACCTTTCATGCCGCGTGTCCGTTTAGCAATGC GGCGGCGAATTTGATGTTGCAGGAGAAGTTGAGTCAGTATTTGGATGTGGTGGAGTTGCATTTGGTGAAGGAGATATCGTTGCGGTCGAATTCGTTTTTC GAGGCGCAAGGGCAGTTGGAGGATTTGAATGGGAAGATTGTGGAAGGGTGTGAGAGGATCAGGGAGTTGAAGGAGACTATTAGGGTTTTGGATAAGGATT TGGTGGAGTCGGCGAGGGAGATTCATGAGCTGAATGTTAGTAGAGGGGATTTGGTTTCTTTGCAGAATAAGTTGAGGCTTATTTTGTATGTTAATCAGGC TCTCTCCACGCTTAAATTGCTTGTTGCATCTGCAGATTGTGCCGGAGCATTGGATGTTACTGATGATTTGCAGCAGTTCTTGGATGGAGATGAGCTGACT GGTCTACATTGTTTTCGTCACCTTCGGGATCATGTGGCAGCTGCAATAGAGTCCATAAACAGCATCCTTTCAGCAGAATTTATGCGAGCTTCAATACATG GTGCTGGGGATAAAGATTTGCTTTTTTTATCCAAAGCAAAAGCCAGGGATTCCATATATATGAATGGAATAGATGAAGAACAGGTTAAGTTGGATGATGA AGAGACGTCCAATTTTCGAGATCATCTTCTTCCTCTCATTGTTGGGTTACTTAGAACTGCCAAGCTCCCCCCTGTGTTGAGAATATACCGAGATACCCTT ACAGCCAGTATGAAAAACACCATTAAGAATGCGGTTGCAGAGCTGCTTCCTACCTTTTCAGCCCAATCTCTGGAGTCAGATCTCACACCTGCAGAGCGAA CAGCAGATACAGATGGTGGAGGTTTATCACTTGCAAGCAAGTTAAGGAGCTTGTCATCCGAAAATTTTGTGCTACTTTTAAGTGCTATTTTCAACATTGT ACAGGCACACTTAGTGCGGGCTGCTGAAGTGAAAAAGGCAATTGAGTGGATTATGTGTAGCGTTGACGGACACTATGCTGCTGATTCAGTTGCTGCTGCA ATTGCAGTTGGTGCAGCAGCTGCTGAAACAGCTCATGAGAGTGATGGTCTAGGTGGTTCTCTTCTCCCCTTTTCTCCACAGAGAAGTACTTCCAAGTTTG CTTCATCTCAGCTGAAAGCAAATGATGCAGCAAGTCCCTCAAATATTTCAAGAAATTTTAGAGCCGATGTATTGAGAGAGAATGCAGAAGCTGTCTTTGC TGCTTGTGATGCTGCTCATGGAAGATGGGCAAAGCTCCTTGGTGTCCGTGCTCTTCTTCATCCAAAGTTGAGATTGGTGGAGTTTTTAAGCATATACAAC ATCACCCAAGATTTTATAACTGCCACTGAAAAGATTGGTGGAAGGTTGGGTTATAGTATTCGTGGAACAATGCAATCACAGGCTAAAGCTTTTGTTGATT TCCAGCATGAAATGCGAATGACAAAAATTAGGGCAGTGCTTGATCAGGAGATGTGGGTGGAAGTAGATGTCCCTGATGAATTTCAGGCCATTGTTGCTTC ATTGTTTTATTCTGAATCTGTGGGCCTAAATGATACTCAAGGTGATGCGACAACCAGATATGGTGAAGTGGGCACAGGCAATGATGGTTCACTTGTGATT GATGCTGAAGCACAAAATGCTGAACAAGAACTTGTGCAAATGAACTCTACAGATATATCTTTGGAAAATTCTGTGCAAAAGAAATCTACTCCCTCAACAG AGGCAACTGAAAGCAATAAAGTCATAGCTGCAACTTCATCAGCTCATAGTAACAATCATAATGCGAAGGAGCGTGGAAAATCTACTTCCCAAACACTTTC TTGTGGAGGTGTTGGTTATCACATGGTAAACTGTGGCTTAATATTGCTGAAGATGTTGTCAGAATACATGGATATGAATAATTTTTTGCCAACACTATCT TCAGAAGTTGTTCATCGTGTCGTGGAGATCTTAAAATTCTTCAATACAAGGACTTGCCAACTTATTCTTGGAGCTGGTGCCATGCAGGTGTCGGGTCTGA AGTCTATTACCTCAAAGCACTTGGCCCTTGCTAGTCAAGTCATCGGTTTTGTACATGCCATTATTCCTGAAATCAGGCGAGTTCTTTTCCTTAAAGTACC TGAAGCACGGAAAGTATTACTGTTGTCAGAGATTGATCGAGTAGCACAGGATTACAAGGTTCATCAAGAGGAGATACTTACAAAGCTGGTTCAGATAATG AGGGAAAGGTTGTTGCATCATCTACGTAGTCTGCCTCAGATTGTTGAGAGCTGGAATAGACCTGTAGATACTGATTCACAGCCTAGTCCTTTTGCTCTAA CGCTTGTAAAGGAGGTTACCTATCTTCAACGAATCTTATCTAGAACTTTACATGAAGCAGATATTCAAGCAATTTTCAGGCAAGTGGTTACAATCTTTCA TAAAGAAATTTCAGAAGCATTTTCACGGATGGAGATCAGCAGTCAGCAAGCAAAGTTCAGGCTTCATCGGGATATTACACTTATCCTTGGATGCATCAGA TCATTACCTTCTGGTAACTTGAGTGAATCGGGTACCCCAAATTGGGGACAACTTGATGAATTTTTGGTTCAAAGATTCGGGTCTGAAGCTGGCTGA
AA sequence Show only first row Show all	>Potri.011G154000.6 pacid=42780999 polypeptide=Potri.011G154000.6.p locus=Potri.011G154000 ID=Potri.011G154000.6.v4.1 annot-version=v4.1 MDSLPSFNSNSNSNSNSPLKKSLSDTTNIQNLSSILNNPHSFKSTDPSAWLGWWSSSTTLAPPDFSPILPKQPPPDISRSDFLPYLSAVSDTYSRFEDIK NHSKNNDLDQESKSDLADAESNSDLAAVGQGEALVACLREVPALYFKEDFALEDGPTFHAACPFSNAAANLMLQEKLSQYLDVVELHLVKEISLRSNSFF EAQGQLEDLNGKIVEGCERIRELKETIRVLDKDLVESAREIHELNVSRGDLVSLQNKLRLILYVNQALSTLKLLVASADCAGALDVTDDLQQFLDGDELT GLHCFRHLRDHVAAAIESINSILSAEFMRASIHGAGDKDLLFLSKAKARDSIYMNGIDEEQVKLDDEETSNFRDHLLPLIVGLLRTAKLPPVLRIYRDTL TASMKNTIKNAVAELLPTFSAQSLESDLTPAERTADTDGGGLSLASKLRSLSSENFVLLLSAIFNIVQAHLVRAAEVKKAIEWIMCSVDGHYAADSVAAA IAVGAAAAETAHESDGLGGSLLPFSPQRSTSKFASSQLKANDAASPSNISRNFRADVLRENAEAVFAACDAAHGRWAKLLGVRALLHPKLRLVEFLSIYN ITQDFITATEKIGGRLGYSIRGTMQSQAKAFVDFQHEMRMTKIRAVLDQEMWVEVDVPDEFQAIVASLFYSESVGLNDTQGDATTRYGEVGTGNDGSLVI DAEAQNAEQELVQMNSTDISLENSVQKKSTPSTEATESNKVIAATSSAHSNNHNAKERGKSTSQTLSCGGVGYHMVNCGLILLKMLSEYMDMNNFLPTLS SEVVHRVVEILKFFNTRTCQLILGAGAMQVSGLKSITSKHLALASQVIGFVHAIIPEIRRVLFLKVPEARKVLLLSEIDRVAQDYKVHQEEILTKLVQIM RERLLHHLRSLPQIVESWNRPVDTDSQPSPFALTLVKEVTYLQRILSRTLHEADIQAIFRQVVTIFHKEISEAFSRMEISSQQAKFRLHRDITLILGCIR SLPSGNLSESGTPNWGQLDEFLVQRFGSEAG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.011G154000 [exp]	0	1
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.005G140200 [exp]	2.82	0.8291	SDG916,Pt-CLF.2
AT3G11130			Clathrin, heavy chain (.1)		Potri.009G073300 [exp]	5.56	0.8784
AT5G22780			Adaptor protein complex AP-2, ...		Potri.009G150300 [exp]	6.78	0.8633
AT2G17790		ZIP3, VPS35A	ZIG suppressor 3, VPS35 homolo...		Potri.005G110600 [exp]	7.21	0.7990
AT2G02860		ATSUT2, ATSUC3,...	ARABIDOPSIS THALIANA SUCROSE T...		Potri.010G093600 [exp]	8.36	0.8353	SUC3.1
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Potri.001G361300 [exp]	11.09	0.8468
AT3G58640			Mitogen activated protein kina...		Potri.002G214400 [exp]	16.52	0.7387
AT1G72770		HAB1	HYPERSENSITIVE TO ABA1, homolo...		Potri.003G044200 [exp]	16.61	0.7173
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	17.43	0.7862
AT3G33530			Transducin family protein / WD...		Potri.018G128400 [exp]	18.00	0.7448

Compare expression of checked genes

Potri.011G154000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.