Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36840 550 / 0 ACR10 ACT domain repeats 10, ACT-like superfamily protein (.1) AT2G39570 421 / 6e-146 ACR9 ACT domain repeats 9, ACT domain-containing protein (.1) AT4G22780 46 / 3e-05 ACR7 ACT domain repeat 7 (.1) AT3G01990 43 / 0.0003 ACR6 ACT domain repeat 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442600 [exp] 737 / 0 AT2G36840 546 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.010G228500 [exp] 571 / 0 AT2G36840 525 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.008G033200 [exp] 558 / 0 AT2G36840 513 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Potri.001G237100 [exp] 434 / 7e-151 AT2G39570 533 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.008G052900 [exp] 402 / 2e-138 AT2G39570 574 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.010G207700 [exp] 394 / 4e-135 AT2G39570 560 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Potri.001G115600 [exp] 49 / 3e-06 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.001G327000 [exp] 45 / 8e-05 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.002G074800 [exp] 43 / 0.0004 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023921 [exp] 631 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10014418 [exp] 630 / 0 AT2G36840 550 / 0.0 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10017470 [exp] 578 / 0 AT2G36840 507 / 1e-179 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10004948 [exp] 415 / 2e-143 AT2G39570 479 / 7e-169 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005157 [exp] 405 / 1e-139 AT2G39570 587 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10001702 [exp] 404 / 2e-139 AT2G39570 582 / 0.0 ACT domain repeats 9, ACT domain-containing protein (.1) Lus10005447 [exp] 320 / 2e-106 AT2G36840 385 / 2e-132 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10028812 [exp] 310 / 5e-104 AT2G36840 288 / 1e-95 ACT domain repeats 10, ACT-like superfamily protein (.1) Lus10019191 [exp] 44 / 0.0002 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 43 / 0.0003 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain
Representative CDS sequence Show only first row Show all	>Potri.011G154600.11 pacid=42781592 polypeptide=Potri.011G154600.11.p locus=Potri.011G154600 ID=Potri.011G154600.11.v4.1 annot-version=v4.1 ATGGGAATTTTGTATGATGATGTAGTGATAATTAGACACTCAGAGAAAGAAGGAGACCCTGCTGTTATCACTGTGAATTGTCCTGACAAGACTGGTCTTG GTTGTGATTTATGTCGTATCATTCTCTTCTTTGGCCTTAGCATTGTTAGAGGAGATGTTTCTACGGATGGGAAATGGTGCTACATAGTGTTTTCGGTGGT TGGCAAATCAACAACAAGGTGGGGTTTATTGAAGAAGAGATTAGTAGGGGCATGCCCTTCTTGCTCTTCAGCATCTGGGATTTCTTATTACACTGCAGAA TTGCAGCCTCCAAGACCACCTGATGTTTTCCTCTTGAAGTTAGCTTGTCATGACAGAAAAGGGCTTTTACATGATGTGACCGGGGTTCTTTGTGAGCTTG AACTCACTATAAAAAAAGTGAAGGTATCCACAACACCGGATGGGAGAGTAATGGACCTATTCTTCGTTACAGATACAAGAGAGCTCCTGCATACAAATAA GAGAAAGGAGGATACATATGATCACTTAAGAGCTGTCATGGGAAATTCAATGATAAGCTGTGACATAGAAATGGTTGGCCCTGAAATTACTGCATGTTCA GCAGAATCTTCATTTCTTCCAACTGCAATCACAGAAAACATTCTCCCTTTGCAAATGCCAGATGAACTCCCCAGTTCACTAACTTCCACTAGTGTTTCTG TTATAATGGACAACTTGCTGAGTCCAGCTCACACCCTTGTTCAAATTGTGTGCCAAGATCACAAGGGTCTTCTTTACGACATAATGAGGACTCTAAAGGA TTACAATATACAGATTTCTTATGGACGCTTTTACATAAAACACAGAAGGACCTGTGAGATTGACTTGTTTATCATGCAAGCTGATGGGAAGAAAATAGTT GATCCTAACAAGCAGAAAGCACTGTCCTCCCGTTTGGAGATGGAACTAGTGCGCCCTCTCCGAGTAGCTGTTGTCAGCCGTGGTCCTGATACAGAGCTGA TGGTGGCGAATCCTGTGGAGTTATCCGGCAAGGGCCGACCTCTTGTTTTCCATGACATCACTCTTGCTCTCACGATGCTTAACAGTTGCATTTTCTCGGC TGAGATTAGGAGGCGCATGATTGGAGATCGGGAATTCGAAGTGTACAGAGTATTACTTGATGAAGGGGAAGGCTTGGCTGTTCCACGAAGAAAAATTGAG GAACAAGTCTGGAAGATGTTAATGGGCTGGGAGCAATGA
AA sequence Show only first row Show all	>Potri.011G154600.11 pacid=42781592 polypeptide=Potri.011G154600.11.p locus=Potri.011G154600 ID=Potri.011G154600.11.v4.1 annot-version=v4.1 MGILYDDVVIIRHSEKEGDPAVITVNCPDKTGLGCDLCRIILFFGLSIVRGDVSTDGKWCYIVFSVVGKSTTRWGLLKKRLVGACPSCSSASGISYYTAE LQPPRPPDVFLLKLACHDRKGLLHDVTGVLCELELTIKKVKVSTTPDGRVMDLFFVTDTRELLHTNKRKEDTYDHLRAVMGNSMISCDIEMVGPEITACS AESSFLPTAITENILPLQMPDELPSSLTSTSVSVIMDNLLSPAHTLVQIVCQDHKGLLYDIMRTLKDYNIQISYGRFYIKHRRTCEIDLFIMQADGKKIV DPNKQKALSSRLEMELVRPLRVAVVSRGPDTELMVANPVELSGKGRPLVFHDITLALTMLNSCIFSAEIRRRMIGDREFEVYRVLLDEGEGLAVPRRKIE EQVWKMLMGWEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Potri.011G154600 [exp]	0	1
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	1.41	0.8309
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.014G093700 [exp]	5.00	0.8056	ATPOB1.1
AT5G43650	bHLH	BHLH92, bHLH092	basic helix-loop-helix (bHLH) ...		Potri.008G161800 [exp]	6.92	0.8102
AT4G28880		CKL3	casein kinase I-like 3 (.1)		Potri.018G041000 [exp]	7.21	0.8239
AT1G43620		UGT80B1, TT15	TRANSPARENT TESTA 15, UDP-Glyc...		Potri.002G067100 [exp]	7.34	0.7855
AT4G16360			5'-AMP-activated protein kinas...		Potri.014G167400 [exp]	10.90	0.7832
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.008G167600 [exp]	10.95	0.7793
AT4G35250			NAD(P)-binding Rossmann-fold s...		Potri.009G143000 [exp]	11.83	0.7652
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.009G149900 [exp]	13.41	0.7788
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035800 [exp]	13.41	0.7765

Compare expression of checked genes

Potri.011G154600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.