Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44560 332 / 9e-117 VPS2.2 SNF7 family protein (.1.2) AT1G03950 281 / 6e-97 VPS2.3 vacuolar protein sorting-associated protein 2.3 (.1) AT2G06530 148 / 2e-44 VPS2.1 SNF7 family protein (.1) AT5G22950 66 / 5e-13 VPS24.1 SNF7 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G442500 [exp] 367 / 7e-131 AT5G44560 328 / 3e-115 SNF7 family protein (.1.2) Potri.005G227000 [exp] 290 / 1e-100 AT1G03950 309 / 3e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.002G035900 [exp] 287 / 2e-99 AT1G03950 308 / 8e-108 vacuolar protein sorting-associated protein 2.3 (.1) Potri.018G065100 [exp] 141 / 1e-41 AT2G06530 332 / 9e-117 SNF7 family protein (.1) Potri.001G170400 [exp] 141 / 1e-41 AT2G06530 326 / 2e-114 SNF7 family protein (.1) Potri.008G034700 [exp] 65 / 9e-13 AT5G22950 337 / 2e-118 SNF7 family protein (.1) Potri.004G215500 [exp] 62 / 2e-11 AT5G22950 332 / 6e-117 SNF7 family protein (.1) Potri.006G144300 [exp] 44 / 4e-06 AT2G06530 62 / 7e-13 SNF7 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038407 [exp] 317 / 1e-110 AT5G44560 323 / 5e-113 SNF7 family protein (.1.2) Lus10023396 [exp] 241 / 4e-80 AT5G44560 270 / 2e-91 SNF7 family protein (.1.2) Lus10033914 [exp] 234 / 3e-78 AT1G03950 278 / 5e-96 vacuolar protein sorting-associated protein 2.3 (.1) Lus10037660 [exp] 145 / 2e-43 AT2G06530 358 / 6e-127 SNF7 family protein (.1) Lus10017166 [exp] 140 / 3e-41 AT2G06530 357 / 2e-126 SNF7 family protein (.1) Lus10015642 [exp] 132 / 9e-38 AT2G06530 338 / 1e-118 SNF7 family protein (.1) Lus10003538 [exp] 87 / 4e-22 AT1G03950 121 / 3e-36 vacuolar protein sorting-associated protein 2.3 (.1) Lus10021561 [exp] 71 / 2e-15 AT2G06530 194 / 1e-63 SNF7 family protein (.1) Lus10021423 [exp] 68 / 1e-13 AT5G22950 354 / 2e-125 SNF7 family protein (.1) Lus10016143 [exp] 66 / 7e-13 AT5G22950 357 / 2e-126 SNF7 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0235 [poplar] [flax] PspA PF03357 [poplar] [flax] Snf7 Snf7
Representative CDS sequence Show only first row Show all	>Potri.011G154700.1 pacid=42781852 polypeptide=Potri.011G154700.1.p locus=Potri.011G154700 ID=Potri.011G154700.1.v4.1 annot-version=v4.1 ATGAACATCTTCAAGAAGAAAACTTCTCCTAAAGAGGCTCTCAGGACTAGCAAGAGAGATATGGTGGTTGCTACTAGAGGTATTGAACGTGAAATTGCAT CACTTCAACTGGAGGAGAAGAAATTGGTGGCAGAGATAAAGCAAACAGCAAAAACTGGAAATGAGGCTGCTACTAAAATCTTAGCCCGGCAACTTGTTCG ACTTCGGCAACAAATAACAAATTTGCAGGGGAGTCGTGCCCAAATCAGAGGTGTTGCTACTCATACACAGGCGCTGTATGCCAGCACTTCAATCTCCACT GGAATGAAAGGTGCAACTAAGGCAATGGTGGCTATGAACAAGCAAATGGCTCCTGCAAAACAAGCTAAAGTGATCAAAGAGTTCCAGAAGCAGTCAGCAC AAATGGATATGACGATTGAGATGATGTCAGAAGCTATAGATGAGACTTTAGACAAAGATGAGGCTGAAGAGGAAACAGAGGAGCTCACTAACCAGGTGCT TGATGAGATTGGTGTGGACATTGCATCTCAGTTATCTTCAGCTCCAAAAGGTCGGATCGCATCAAAGAATGCTCCTCCTAATGCTGTTACAAGTCCTGAA TCTACCAATGTTGAGGATCTTGAGAAAAGACTGGCCTCTCTACGACGCATTTGA
AA sequence Show only first row Show all	>Potri.011G154700.1 pacid=42781852 polypeptide=Potri.011G154700.1.p locus=Potri.011G154700 ID=Potri.011G154700.1.v4.1 annot-version=v4.1 MNIFKKKTSPKEALRTSKRDMVVATRGIEREIASLQLEEKKLVAEIKQTAKTGNEAATKILARQLVRLRQQITNLQGSRAQIRGVATHTQALYASTSIST GMKGATKAMVAMNKQMAPAKQAKVIKEFQKQSAQMDMTIEMMSEAIDETLDKDEAEEETEELTNQVLDEIGVDIASQLSSAPKGRIASKNAPPNAVTSPE STNVEDLEKRLASLRRI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44560		VPS2.2	SNF7 family protein (.1.2)		Potri.011G154700 [exp]	0	1
AT2G34190			Xanthine/uracil permease famil...		Potri.011G068200 [exp]	1.00	0.9304
AT1G70280			NHL domain-containing protein ...		Potri.010G094200 [exp]	2.44	0.9176
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	3.00	0.9172
AT2G01210			Leucine-rich repeat protein ki...		Potri.010G120100 [exp]	4.58	0.8859
AT1G01225			NC domain-containing protein-r...		Potri.014G101300 [exp]	6.32	0.9058
					Potri.015G107125 [exp]	7.93	0.8662
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	8.06	0.9079	ALDH22.1
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	8.36	0.9052	Pt-CALS1.3
AT3G57880			Calcium-dependent lipid-bindin...		Potri.016G049100 [exp]	8.48	0.9005
AT5G52840			NADH-ubiquinone oxidoreductase...		Potri.017G149100 [exp]	8.94	0.8900

Compare expression of checked genes

Potri.011G154700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.