Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GSNAP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20410 379 / 6e-133 GAMMA-SNAP, GSNAP gamma-soluble NSF attachment protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440600 [exp] 491 / 2e-177 AT4G20410 375 / 2e-131 gamma-soluble NSF attachment protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013109 [exp] 407 / 4e-144 AT4G20410 439 / 5e-157 gamma-soluble NSF attachment protein (.1) Lus10008061 [exp] 401 / 1e-141 AT4G20410 433 / 2e-154 gamma-soluble NSF attachment protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF14938 [poplar] [flax] SNAP Soluble NSF attachment protein, SNAP
Representative CDS sequence Show only first row Show all	>Potri.011G155200.1 pacid=42780311 polypeptide=Potri.011G155200.1.p locus=Potri.011G155200 ID=Potri.011G155200.1.v4.1 annot-version=v4.1 ATGCCCGCTTCCGACCCCGAAAAGCTAATTGCCAAGGCTGATAAACTGACTAAACTCAGTCTTACAAGATGGAGTGCTGATTGGAGAAATGCCACTCTTT TGTATGAAGAAGCTGCTAATTTGTTTAGGGTTGCAAAGAAAAATGAAAAAGCAAAAGAAGCATTTGAGAAGGCTTCCAAAGGACAAGAGATGCTTTCTTC ACCTTGGGATGCTGCTAAAGATATGGAGTCTGCTGCTGCTCTAGCAAAGGAGCTAGGCAACTGGAATGAAGTCTCTGACTTTTATAGAAGAGCATCTGAG TTGTACATGGAGTGTGGGAGACCACAGCCGGCATCAGATGCTCTAGCTAAGGCTGCTCGTGCACTGGAAGATACTATACCTGACGCTGCTGTTCAGCTGT ACAATGATGCTTCCACTATTCTTGAAGAAGATGGCAAAGAACAGATGGCCTTTGATCTATACCGTGCTGCCTCTAGTGTGTATATAAAGCTTGAGAAGTA TAGTGATGCTGCAGCTTCTTTGTTGCAATTGGGTCTAGCAGCAGATAAATGCAATGCCACCAATAGCCAGTGCAAGGCATATCTTGGTGCAATTATTGTG TACCTTTACGCTCATGACTTCAAGCAAGCAGAAAAGTGCTACAATGATTGCTCACAGGTTGATGCTTTTCTGAGAAGTGACCAGAACCGCTGTGCTAGTA AACTGCTTTCAGCTTACACAGAAGGTGATATCGAAGAAATCAAACGTCTTGCTCAGTCCAACACTGTTTCAAATCTTGACCATGTGGTAATCAAGCTAGC AAGAAAGCTACCAACTGGTGATGTTAGTGCTTTGAAGACCGATGCTGCCAAAGAGGAGGAAGAGCCATTGGATGAGAATGACCTCACATAG
AA sequence Show only first row Show all	>Potri.011G155200.1 pacid=42780311 polypeptide=Potri.011G155200.1.p locus=Potri.011G155200 ID=Potri.011G155200.1.v4.1 annot-version=v4.1 MPASDPEKLIAKADKLTKLSLTRWSADWRNATLLYEEAANLFRVAKKNEKAKEAFEKASKGQEMLSSPWDAAKDMESAAALAKELGNWNEVSDFYRRASE LYMECGRPQPASDALAKAARALEDTIPDAAVQLYNDASTILEEDGKEQMAFDLYRAASSVYIKLEKYSDAAASLLQLGLAADKCNATNSQCKAYLGAIIV YLYAHDFKQAEKCYNDCSQVDAFLRSDQNRCASKLLSAYTEGDIEEIKRLAQSNTVSNLDHVVIKLARKLPTGDVSALKTDAAKEEEEPLDENDLT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	0	1	Pt-GSNAP.1
AT1G60970			SNARE-like superfamily protein...		Potri.001G352900 [exp]	1.00	0.8992
AT5G42000			ORMDL family protein (.1.2)		Potri.001G086300 [exp]	4.69	0.8950
AT4G00430		PIP1;4, TMP-C, ...	TRANSMEMBRANE PROTEIN C, PLASM...		Potri.003G128600 [exp]	5.00	0.8862
AT5G57815			Cytochrome c oxidase, subunit ...		Potri.018G099900 [exp]	6.92	0.8887
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Potri.005G007400 [exp]	7.21	0.8874	Pt-ARF1.7
AT2G23090			Uncharacterised protein family...		Potri.014G018100 [exp]	8.12	0.8633
AT5G20165			unknown protein		Potri.010G058300 [exp]	9.94	0.8682
AT1G32050			SCAMP family protein (.1)		Potri.003G099300 [exp]	10.53	0.8355
AT5G59890		ADF4, ATADF4	actin depolymerizing factor 4 ...		Potri.009G028200 [exp]	11.74	0.8842	Pt-ADF1.1
AT5G37680		ATARLA1A	ADP-ribosylation factor-like A...		Potri.004G086200 [exp]	12.48	0.8632

Compare expression of checked genes

Potri.011G155200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.