Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20430 1142 / 0 Subtilase family protein (.1.2) AT5G44530 1106 / 0 Subtilase family protein (.1) AT1G30600 1051 / 0 Subtilase family protein (.1) AT2G19170 607 / 0 SLP3 subtilisin-like serine protease 3 (.1) AT4G30020 594 / 0 PA-domain containing subtilase family protein (.1) AT1G62340 497 / 1e-163 ALE1 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) AT4G34980 270 / 9e-79 SLP2 subtilisin-like serine protease 2 (.1) AT5G67360 266 / 2e-77 ARA12 Subtilase family protein (.1) AT4G10550 266 / 3e-77 Subtilase family protein (.1.2.3) AT3G14240 266 / 6e-77 Subtilase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G440300 [exp] 1502 / 0 AT4G20430 1107 / 0.0 Subtilase family protein (.1.2) Potri.006G076200 [exp] 614 / 0 AT2G19170 1342 / 0.0 subtilisin-like serine protease 3 (.1) Potri.018G143400 [exp] 613 / 0 AT4G30020 1338 / 0.0 PA-domain containing subtilase family protein (.1) Potri.001G151100 [exp] 575 / 0 AT2G19170 615 / 0.0 subtilisin-like serine protease 3 (.1) Potri.011G010700 [exp] 320 / 1e-99 AT1G62340 631 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Potri.004G173900 [exp] 274 / 5e-80 AT4G34980 1108 / 0.0 subtilisin-like serine protease 2 (.1) Potri.002G256300 [exp] 274 / 6e-80 AT1G04110 1020 / 0.0 STOMATAL DENSITY AND DISTRIBUTION, Subtilase family protein (.1) Potri.014G018900 [exp] 270 / 1e-78 AT5G67360 994 / 0.0 Subtilase family protein (.1) Potri.001G163600 [exp] 269 / 4e-78 AT3G14240 1174 / 0.0 Subtilase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023389 [exp] 1256 / 0 AT4G20430 1173 / 0.0 Subtilase family protein (.1.2) Lus10038416 [exp] 1253 / 0 AT5G44530 1169 / 0.0 Subtilase family protein (.1) Lus10008060 [exp] 1153 / 0 AT4G20430 1112 / 0.0 Subtilase family protein (.1.2) Lus10006973 [exp] 587 / 0 AT4G30020 1334 / 0.0 PA-domain containing subtilase family protein (.1) Lus10000960 [exp] 547 / 0 AT4G30020 658 / 0.0 PA-domain containing subtilase family protein (.1) Lus10001006 [exp] 546 / 0 AT2G19170 629 / 0.0 subtilisin-like serine protease 3 (.1) Lus10040146 [exp] 543 / 0 AT2G19170 655 / 0.0 subtilisin-like serine protease 3 (.1) Lus10001310 [exp] 531 / 2e-177 AT4G30020 1258 / 0.0 PA-domain containing subtilase family protein (.1) Lus10015559 [exp] 463 / 8e-151 AT1G62340 903 / 0.0 ABNORMAL LEAF-SHAPE 1, ABNORMAL LEAF-SHAPE, PA-domain containing subtilase family protein (.1) Lus10011018 [exp] 382 / 3e-121 AT2G19170 445 / 3e-146 subtilisin-like serine protease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00082 [poplar] [flax] Peptidase_S8 Subtilase family
Representative CDS sequence Show only first row Show all	>Potri.011G155400.1 pacid=42782153 polypeptide=Potri.011G155400.1.p locus=Potri.011G155400 ID=Potri.011G155400.1.v4.1 annot-version=v4.1 ATGGAAGGTATCTACTTGGTGCATTTAATGGTAATGGTGCTTACTCTGGGGTTGTTAGCAGGCGCTTTGTGTCAGGTTGATGATGGTTCAGACAATGAAA CTACAGCTGTTTACATTGTTACTCTTAAACAAGCTCCTGCTTCTCATTACTATGGAAAGCTTAGAAAGAATACTAATGTTTTCAAGCATGGTGTTCCTAG AAATCCAAATCAATTTCACAATCGAAGGGATAATTCGAGATCCAACTGGAGTTCTAGTTCATATGTTGCTCGAGTTCATGATTCATTATTGAGGAGGGTG TTGAGAGGGGAGAAGTATCTCAAGCTGTACAGCTATCACTACTTGATTAATGGGTTTGCTGTTCTTGTTACCCCGGAACAGGCCTTTAAGCTTTCGAGGA GGAGAGAAGTGGCAAATGTGGCGTTGGATTTCTCTGTTAGAACTGCAACCACACACACTCCACAGTTCCTGGGCCTGCCACAAGGGGCTTGGGTCAAAGC AGGTGGATATGAAACTGCCGGTGAAGGAATTGTGATTGGCTTTGTTGATACTGGCATCGATCCAACTCACCCCAGCTTCGCTGATGACATATCTTTGAAC TCATATCCAGTCCCTAGCCATTTTTCAGGCATTTGTGAGGTTACTCGAGATTTCCCTTCTGGTTCCTGCAATAGGAAGCTGATTGGGGCACGCCATTTTG CAGCATCTGCTATCACCAGGGGAATTTTCAATTCAAGTCTGGACTATGCTTCTCCATTTGATGGTGATGGTCATGGAACGCATACTGCCTCTGTTGCTGC AGGAAACCATGGGATTCCAGTGATAGTTGCTGGACATTGTTTTGGGAATGCCAGTGGGATGGCTCCTCGTGCACATGTTTCTGTTTACAAGGCATTGTAT AAGAGTTTTGGAGGCTTCGCTGCTGATGTTGTTGCTGCTATAGATCAGGCAGCTCAGGATGGGGTTGATGTTTTAAGTTTATCTATTACTCCCAACAGGC GTCCTCCTGGTATTGCAACATTCTTTAATCCCATAGACATGGCGTTGCTCTCAGCTGTGAAGGCTGGCATTTTTATTGTGCAAGCTGCCGGCAATACTGG GCCATCGCCTAAGAGCATGTCTTCCTTCAGTCCATGGATCTTCACTGTTGGTGCGGCTTCTCATGACAGAGTTTATAGTAACTCTATAATACTCGGCAAC AATGTAACCATTCATGGAGTTGGACTTGCACCGGGAACAGATGAAGACACCATGTTGACCCTTGTTTCTGCACTTCATGCCGTGAACAATGAGACAACAG TTACTACTGATATGTATGTGGGTGAATGTCAAGATTCCAGTACCTTCAATCAGGATTTTATCGAAGGAAACCTCTTGATCTGTAGTTATTCAATTCGATT TGTGCTTGGACTTTCCACAATCAAACAAGCTGTAGAAACAGCCAAAAACCTCAGTGCAGCTGGGGTGGTGTTCTACATGGATCCTTTTGTAATTGGTTAT CAGCTTAATCCAATTCCAATGAGTGTGCCTGGGATCATAATTCCATCCCCTGATGATTCCAAGGTTTTACTCCAATACTACAATTCTTCTTTGGAGAGGA ACGGAACTACAAAGCAAATTACTAAATTTGGTGCTGTTGCAAGCATTTTAGGTGGACTTAAAGCTAACTACTCCAATTCTGCTCCCAAAGTCGTGTACTA TTCTGCAAGAGGACCGGATCCAGAAGATAGTTTTCTTGATGATGCTGACATTTTGAAACCCAACTTGGTAGCTCCTGGAAATTCAATATGGGCTGCATGG AGTTCACTTGGCACGGACTCAGTTGAATTTCAAGGTGAGAACTTTGCAATGATGTCTGGGACGAGTATGGCTGCTCCTCATATTGCTGGGCTTGCTGCAC TGATCAAGCAAAAATTCCCCAGTTTCAGTCCTTCAGCAATTGCCTCTGCGCTTTCCTCAACTGCTTCTTTATATGACAATAATGGTGGGCCAATAATGGC TCAGCGTGCTTATGCCAACCCAGATCTAAATCAGTCTCCAGCCACGCCATTCGACATGGGAAGTGGTTTTGTGAATGCAACTGCTGCTCTTGATCCGGGT TTGATTTTCGATTCCAGTTATGATGACTATATGTCATTTCTTTGTGGCATTAACGGATCTAGTCCTGTGGTCCTGAACTACACCGGACAAAATTGTTTGT CTTATAACTCAACCATCAATGGCACTGACCTGAATCTTCCCTCCATCACAATCGCTAAACTATATCAGTCTAGAATGGTCCAAAGATCCGTGACTAACAT TGCTGGTAATGAAACGTACAAAGTTGGTTGGAGTGCTCCTTATGGAGTGACTGTAAAGGTGGTTCCGGCCTGCTTCTCTATTGCCAGTGGGGAAAGGCAA GTCTTGAGTGTGTTCTTTGACGCAATAATGAATAGTTCTACTGCTAGCCATGGAAGGATAGGACTATTTGGAGATCAGGGTCATGTTCTCAACATTCCAT TGTCTGTCATTGTCAAAGTCACATATAATACCACGACAAACGGCTGA
AA sequence Show only first row Show all	>Potri.011G155400.1 pacid=42782153 polypeptide=Potri.011G155400.1.p locus=Potri.011G155400 ID=Potri.011G155400.1.v4.1 annot-version=v4.1 MEGIYLVHLMVMVLTLGLLAGALCQVDDGSDNETTAVYIVTLKQAPASHYYGKLRKNTNVFKHGVPRNPNQFHNRRDNSRSNWSSSSYVARVHDSLLRRV LRGEKYLKLYSYHYLINGFAVLVTPEQAFKLSRRREVANVALDFSVRTATTHTPQFLGLPQGAWVKAGGYETAGEGIVIGFVDTGIDPTHPSFADDISLN SYPVPSHFSGICEVTRDFPSGSCNRKLIGARHFAASAITRGIFNSSLDYASPFDGDGHGTHTASVAAGNHGIPVIVAGHCFGNASGMAPRAHVSVYKALY KSFGGFAADVVAAIDQAAQDGVDVLSLSITPNRRPPGIATFFNPIDMALLSAVKAGIFIVQAAGNTGPSPKSMSSFSPWIFTVGAASHDRVYSNSIILGN NVTIHGVGLAPGTDEDTMLTLVSALHAVNNETTVTTDMYVGECQDSSTFNQDFIEGNLLICSYSIRFVLGLSTIKQAVETAKNLSAAGVVFYMDPFVIGY QLNPIPMSVPGIIIPSPDDSKVLLQYYNSSLERNGTTKQITKFGAVASILGGLKANYSNSAPKVVYYSARGPDPEDSFLDDADILKPNLVAPGNSIWAAW SSLGTDSVEFQGENFAMMSGTSMAAPHIAGLAALIKQKFPSFSPSAIASALSSTASLYDNNGGPIMAQRAYANPDLNQSPATPFDMGSGFVNATAALDPG LIFDSSYDDYMSFLCGINGSSPVVLNYTGQNCLSYNSTINGTDLNLPSITIAKLYQSRMVQRSVTNIAGNETYKVGWSAPYGVTVKVVPACFSIASGERQ VLSVFFDAIMNSSTASHGRIGLFGDQGHVLNIPLSVIVKVTYNTTTNG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20430			Subtilase family protein (.1.2...		Potri.011G155400 [exp]	0	1
AT3G21620			ERD (early-responsive to dehyd...		Potri.002G226800 [exp]	4.12	0.8652
AT4G24265			unknown protein		Potri.003G001200 [exp]	6.00	0.8521
AT4G27640			ARM repeat superfamily protein...		Potri.008G085800 [exp]	9.16	0.8231
AT3G16200			unknown protein		Potri.003G051200 [exp]	12.80	0.7876
AT2G21050		LAX2	like AUXIN RESISTANT 2 (.1)		Potri.009G132100 [exp]	17.74	0.8420	PtrAUX6,Pt-LAX5.1
AT2G15730			P-loop containing nucleoside t...		Potri.004G143300 [exp]	20.49	0.7907
					Potri.018G114600 [exp]	21.16	0.8565
AT3G44730		AtKIN14h, ATKP1	ARABIDOPSIS KINESIN-LIKE PROTE...		Potri.001G467600 [exp]	23.10	0.8493
AT5G26910			unknown protein		Potri.005G019700 [exp]	25.45	0.7876
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Potri.008G179600 [exp]	25.80	0.8390

Compare expression of checked genes

Potri.011G155400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.