Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44520 294 / 1e-99 NagB/RpiA/CoA transferase-like superfamily protein (.1) AT2G01290 91 / 2e-21 RPI2 ribose-5-phosphate isomerase 2 (.1) AT1G71100 89 / 1e-20 RSW10 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) AT3G04790 89 / 2e-20 EMB3119 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G225700 [exp] 100 / 8e-25 AT2G01290 378 / 1e-133 ribose-5-phosphate isomerase 2 (.1) Potri.008G127600 [exp] 94 / 2e-22 AT2G01290 365 / 2e-128 ribose-5-phosphate isomerase 2 (.1) Potri.005G052000 [exp] 93 / 7e-22 AT3G04790 354 / 9e-124 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.010G115300 [exp] 91 / 2e-21 AT2G01290 368 / 1e-129 ribose-5-phosphate isomerase 2 (.1) Potri.013G039400 [exp] 91 / 3e-21 AT3G04790 379 / 2e-133 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.006G039700 [exp] 66 / 6e-12 AT3G04790 122 / 2e-31 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Potri.006G039800 [exp] 64 / 2e-11 AT1G71100 122 / 2e-31 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008059 [exp] 304 / 1e-103 AT5G44520 290 / 4e-98 NagB/RpiA/CoA transferase-like superfamily protein (.1) Lus10032450 [exp] 103 / 6e-26 AT1G71100 362 / 3e-127 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10042951 [exp] 102 / 1e-25 AT1G71100 356 / 4e-125 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10015919 [exp] 99 / 3e-24 AT3G04790 390 / 4e-138 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10036094 [exp] 96 / 3e-23 AT2G01290 342 / 2e-119 ribose-5-phosphate isomerase 2 (.1) Lus10026777 [exp] 92 / 7e-22 AT1G71100 344 / 3e-120 RADIAL SWELLING 10, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009180 [exp] 76 / 5e-16 AT3G04790 318 / 8e-110 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1) Lus10009181 [exp] 40 / 0.0001 AT3G04790 126 / 1e-37 EMBRYO DEFECTIVE 3119, Ribose 5-phosphate isomerase, type A protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0246 [poplar] [flax] ISOCOT_Fold PF06026 [poplar] [flax] Rib_5-P_isom_A Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
Representative CDS sequence Show only first row Show all	>Potri.011G155500.1 pacid=42781926 polypeptide=Potri.011G155500.1.p locus=Potri.011G155500 ID=Potri.011G155500.1.v4.1 annot-version=v4.1 ATGGCATCATTAGCAACATCAACACTCGTGTACTCTACTCCTGTTAGAATCAAAACTAGTTCAAAGCCAAGGTCAAGTTCAAGAACTTGCAAGAAAACAG TCCCTTTCCTTGTTACTAGAGCAGACAGTTCTTCTCTTCTCCTCCATGCAGCTAAGCACACTGTTGATAAACACATACAAAGTGGCATGGTTGTTGGTTT AGGGTCTGGACAGGCTTCTGGTATGGCTATACAGTATCTGGGTCGGCTACTCCGAACTGGGGCTTTAAAAGACATAGTTGGAGTACCCATGTCTGTAACA AGTGCAAGTGAAGCAGCAAAGGCTGGCATCCCATTGGACGTATACCAAGATAGTTCTCAAATTGATTTTGCATTTGATGATGCTGATATTATAGAAGAAG AAACACTTGTTGCAATCATTGGACGTCAGAAATCACAGAGCGACGAGTCCATCATTCAAGAGAAGTCAATACTCAAAGCAGCCAATAAGCTTGTATTCAT GATTACAGAAAACCAGTACGTGGGAGGTCTTGAAGGTTCTATTCCAGTTTTGGTTCAAGCTCTCAACTGGATGGAAACTGCTGAAGAGATTGATGACCTA TTTTTAGGTGATGCAGAGGTATGGAGGAGATCATCGATAGGACAAGCTGGTCCGACGGGGGGCGATTACCCTTTCATTACAAGAGAAGGTCACAACGTTC TTGATGTCATCTTCACATCTCCAGTACAAAGCCTTGCTGAAGTAGCTGAAAGTCTTGATAAAGTTGATGGCGTTGTTGATCATGGAGTTTTTTCCAAGTT CCCATGCACTGTTGTGATTGCTGCTGAAAGTGGAGGTCTGAACATTGTTGATAGATAG
AA sequence Show only first row Show all	>Potri.011G155500.1 pacid=42781926 polypeptide=Potri.011G155500.1.p locus=Potri.011G155500 ID=Potri.011G155500.1.v4.1 annot-version=v4.1 MASLATSTLVYSTPVRIKTSSKPRSSSRTCKKTVPFLVTRADSSSLLLHAAKHTVDKHIQSGMVVGLGSGQASGMAIQYLGRLLRTGALKDIVGVPMSVT SASEAAKAGIPLDVYQDSSQIDFAFDDADIIEEETLVAIIGRQKSQSDESIIQEKSILKAANKLVFMITENQYVGGLEGSIPVLVQALNWMETAEEIDDL FLGDAEVWRRSSIGQAGPTGGDYPFITREGHNVLDVIFTSPVQSLAEVAESLDKVDGVVDHGVFSKFPCTVVIAAESGGLNIVDR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44520			NagB/RpiA/CoA transferase-like...		Potri.011G155500 [exp]	0	1
AT1G45474		LHCA5	photosystem I light harvesting...		Potri.002G126600 [exp]	1.00	0.8889
AT5G37360			unknown protein		Potri.013G050300 [exp]	2.44	0.8795
					Potri.002G044400 [exp]	2.44	0.8398
AT1G21500			unknown protein		Potri.013G128700 [exp]	26.83	0.8439
AT1G32540		LOL1	lsd one like 1 (.1.2.3)		Potri.001G143900 [exp]	27.34	0.7431
AT1G02910		LPA1	LOW PSII ACCUMULATION1, tetrat...		Potri.002G206300 [exp]	31.38	0.8420
AT4G18460			D-Tyr-tRNA(Tyr) deacylase fami...		Potri.011G062200 [exp]	33.54	0.7341
AT1G30520		AAE14	acyl-activating enzyme 14 (.1)		Potri.011G164100 [exp]	34.77	0.7993
AT4G16060			unknown protein		Potri.010G006000 [exp]	39.34	0.7618
AT2G25840		OVA4	ovule abortion 4, Nucleotidyly...		Potri.003G158000 [exp]	40.42	0.7976

Compare expression of checked genes

Potri.011G155500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.