Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	COPE2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30630 506 / 0 Coatomer epsilon subunit (.1) AT2G34840 502 / 0 Coatomer epsilon subunit (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023385 [exp] 460 / 3e-165 AT1G30630 495 / 5e-179 Coatomer epsilon subunit (.1) Lus10003497 [exp] 447 / 2e-160 AT1G30630 467 / 2e-168 Coatomer epsilon subunit (.1) Lus10038422 [exp] 417 / 2e-148 AT1G30630 452 / 1e-162 Coatomer epsilon subunit (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF04733 [poplar] [flax] Coatomer_E Coatomer epsilon subunit
Representative CDS sequence Show only first row Show all	>Potri.011G155800.1 pacid=42781585 polypeptide=Potri.011G155800.1.p locus=Potri.011G155800 ID=Potri.011G155800.1.v4.1 annot-version=v4.1 ATGGCAGGAGCACCAGATCATCTTTTCAATTTGCGTAACAATTTCTATTTAGGAGCATATCAAGCAGCAATCAACACCAGCGACCTTCCCAATCTCTCCC CTGACGACGCCGTTGAGCGTGACTCACTTGTTTATCGTTCTTACATTGCCCTTGCCAGCTACCAGCTTGTGATTCATGAGATTGATGATGCCGCTGCTAC TCCACTTCAGGCTGTGAAATTGCTCGCTTTGTATCTCTCAAGCCCTGAAAACAAGGAATCCACGATTTCAAGCTTGAAAGAGTGGTTGGCTGATTCAGCT ATTGCGAACAATGCTATCTTGAGGTTGATTGCTGGAATCATATTCATGCACGAGGAGGATTACAATGAGGCTCTGAAACACACTAATGCTGGAGGCACAA TGGAACTACATGCATTGAATGTCCAAATATTCCTCAAGATGCACAGGTCAGACTATGCAGAGAAACAGTTGAGGATCATGCAGCAGATTGATGAGGACCA CACACTAACTCAACTTGCAACTGCATGGTTGAATCTGGCAGTTGGTGGATCAAAGATACAGGAAGCATATCTCATCTTCCAAGATTTCTCTGAGAAGTAC CCAATGACAGGGTTAATCTTGAATGGAAAGGCTGTTTGTTGCATGCACATGGGTAACTTTGATGAAGCTGAAACACTGTTGCTTGAAGCACTAAACAAGG ATGCAAAGGATCCAGAGACACTAGCCAATTTGGTTGTATGCAGTCTTCACATTGGCAAATCTTCTTCACGTTATCTCAGCCAACTGAAGCTTTCACATCC AGACCACGTTCTTGTTAAACGAGCGTCATCCGCCGAAGACAACTTTGAAAGAGCAGTTCAGTCAGTTGCTTGA
AA sequence Show only first row Show all	>Potri.011G155800.1 pacid=42781585 polypeptide=Potri.011G155800.1.p locus=Potri.011G155800 ID=Potri.011G155800.1.v4.1 annot-version=v4.1 MAGAPDHLFNLRNNFYLGAYQAAINTSDLPNLSPDDAVERDSLVYRSYIALASYQLVIHEIDDAAATPLQAVKLLALYLSSPENKESTISSLKEWLADSA IANNAILRLIAGIIFMHEEDYNEALKHTNAGGTMELHALNVQIFLKMHRSDYAEKQLRIMQQIDEDHTLTQLATAWLNLAVGGSKIQEAYLIFQDFSEKY PMTGLILNGKAVCCMHMGNFDEAETLLLEALNKDAKDPETLANLVVCSLHIGKSSSRYLSQLKLSHPDHVLVKRASSAEDNFERAVQSVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30630			Coatomer epsilon subunit (.1)		Potri.011G155800 [exp]	0	1	COPE2.1
AT5G05010			clathrin adaptor complexes med...		Potri.015G125400 [exp]	1.41	0.9729
AT1G60970			SNARE-like superfamily protein...		Potri.003G043200 [exp]	1.73	0.9634
AT5G11980			conserved oligomeric Golgi com...		Potri.006G225500 [exp]	2.82	0.9672
AT2G43640			Signal recognition particle, S...		Potri.013G125200 [exp]	3.31	0.9519
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	3.60	0.9509
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.006G116800 [exp]	4.35	0.9457	ENO.1
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.018G007400 [exp]	4.47	0.9615
AT5G42560			Abscisic acid-responsive (TB2/...		Potri.005G237900 [exp]	5.29	0.9546
AT5G10840			Endomembrane protein 70 protei...		Potri.006G264500 [exp]	5.65	0.9530
AT4G23690			Disease resistance-responsive ...		Potri.001G097001 [exp]	5.83	0.9472

Compare expression of checked genes

Potri.011G155800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.