Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20800 616 / 0 FAD-binding Berberine family protein (.1) AT1G26390 590 / 0 FAD-binding Berberine family protein (.1) AT1G26420 588 / 0 FAD-binding Berberine family protein (.1) AT1G26380 573 / 0 FAD-binding Berberine family protein (.1) AT1G26400 560 / 0 FAD-binding Berberine family protein (.1) AT1G26410 557 / 0 FAD-binding Berberine family protein (.1) AT1G30700 556 / 0 FAD-binding Berberine family protein (.1) AT1G34575 551 / 0 FAD-binding Berberine family protein (.1) AT1G30710 542 / 0 FAD-binding Berberine family protein (.1) AT1G30720 527 / 0 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459100 [exp] 939 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 782 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 740 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 718 / 0 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 660 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 619 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 600 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 594 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 561 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023374 [exp] 578 / 0 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 565 / 0 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 562 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 560 / 0 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 549 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 546 / 0 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 526 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 500 / 3e-173 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 481 / 2e-166 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 479 / 1e-164 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G155900.1 pacid=42781465 polypeptide=Potri.011G155900.1.p locus=Potri.011G155900 ID=Potri.011G155900.1.v4.1 annot-version=v4.1 ATGAAGGTTTCAATGACTGTAATTCTCTCAGTATTTTCAGCCCTCTTGCTGTCTGTATCACTGGCAGCTAATTCTGATCCAAGTCTTGACAACTTTCTAC AATGCCTTCCAAATAATAGCCTTCCCTCTTACCCTATTTCTGAAGCCATCTATACCACTGCCAACCCCTCTTTCGAGTCTGTTCTGCTGACATACATCAA CAACCGTAGATTTCTGACCCCAACAACACCGAAGCCACTTGCGATAGTCACTGCCCTGCATGAATCCCATGTCCAAGCGACAGTAGTTTGTGCAAAGTCT CATGGCTTGCAGGTTAGAATCCGGAGTGGTGGCCATGATTACGAAGGTCTTTCTTATGTGTCAGAGGTCCCATTCGTCATCCTCGACATGTTCAATCTCC GATCCATCGACATAGATCTTGCCAGCGAAACGGCATGGGTTCAAGCTGGGGCAACTCTTGGTGAAATTTACTACAATATTGCAAACAAGAGTAACGTGCA TGCCTTTCCAGCTGGTGTTTGCCCTACAATTGGTGCAGGTGGTCATATTAGCGGAGGAGGGTACGGGACTCTGATGAGGAAATATGGTCTTTCGGTGGAT AATGTCATTGATGCGAAAGTAGTAGATGTGAAAGGTAATATCCTTGATAGGCAGACAATGGGGGAAGATCTATTTTGGGCCATCAGAGGAGGAGGTGGAG CAAGCTTCGGAGTCATTCTTTCTTGGAAGATCAATTTGGTTCGAGTTCCGGCTAAAGTGACTGTTTTCAAGGTTGATAGGACCTTGGAGGAAGGTGCAAC TGATATCTTTTATCAGTGGCAACAAGTTTCCACTGAGCTAGACAAAGAGCTTTTCATCAGAGCAATGCCACAAGTTGCCAATGGAAGTGTCGAAGGTACA AAGACGATTAGAATCTCTTTCTATGGCCTCTTTCTCGGTCAAAGTGGTACCCTTATTTCCATGATGAACAAGCGCTTCCCTGAATTGGGTTTGCAGCAAA GCGACTGTATCGAAATGAGATGGATAGAATCCACACTTTTCTGGTTTGATTTGCCAAATGGTACGTCCATCGATGTTCTCCTCAATAGGCCTCGTGGAGC GCAAAGCTTTTACAAGAACAAGTCTGATTACGTGAACCATATTGTTCCAAAGGAAGCTCTGGAACGCATATGGAAGATGATGATCAAGGCCGAGCCAATG TGGATGCAATGGAACCCTATTGGAGGAAGAATGAGTGAGATTCCGGATACCGCAACTCCATTCCCTCACAGAGCAGGATACCTCTTCAAACTCCAGTACT CCATAAACTGGAGAGAAGAAGGGACCGAGGCCACAGACCGCTACATAAGTCTGATAAGAGAGATGCATGATGCAATGGCTCCATATGTCACGAAGTTCCC AAGGGAGGCATTTCAAAACTATAGAGATCTTGATATTGGCAGCAGTCCGAGCAATCAGACCAACTTCGAGGAAGCTAAAGAGTATGGCCTCAAATACTTC AAGGGTAACTTTCTAAGATTGGTGAAAGTCAAGGGAATGGTTGATCCAGATAATTTCTTCAAGCATGAACAAAGTATTCCTCCCCGTTGGATGTAG
AA sequence Show only first row Show all	>Potri.011G155900.1 pacid=42781465 polypeptide=Potri.011G155900.1.p locus=Potri.011G155900 ID=Potri.011G155900.1.v4.1 annot-version=v4.1 MKVSMTVILSVFSALLLSVSLAANSDPSLDNFLQCLPNNSLPSYPISEAIYTTANPSFESVLLTYINNRRFLTPTTPKPLAIVTALHESHVQATVVCAKS HGLQVRIRSGGHDYEGLSYVSEVPFVILDMFNLRSIDIDLASETAWVQAGATLGEIYYNIANKSNVHAFPAGVCPTIGAGGHISGGGYGTLMRKYGLSVD NVIDAKVVDVKGNILDRQTMGEDLFWAIRGGGGASFGVILSWKINLVRVPAKVTVFKVDRTLEEGATDIFYQWQQVSTELDKELFIRAMPQVANGSVEGT KTIRISFYGLFLGQSGTLISMMNKRFPELGLQQSDCIEMRWIESTLFWFDLPNGTSIDVLLNRPRGAQSFYKNKSDYVNHIVPKEALERIWKMMIKAEPM WMQWNPIGGRMSEIPDTATPFPHRAGYLFKLQYSINWREEGTEATDRYISLIREMHDAMAPYVTKFPREAFQNYRDLDIGSSPSNQTNFEEAKEYGLKYF KGNFLRLVKVKGMVDPDNFFKHEQSIPPRWM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20800			FAD-binding Berberine family p...		Potri.011G155900 [exp]	0	1
AT2G43000	NAC	ANAC042, JUB1, ...	NAC domain containing protein ...		Potri.003G149700 [exp]	2.44	0.9586
					Potri.012G053301 [exp]	6.32	0.9444
AT1G14870		AtPCR2, PCR2	PLANT CADMIUM RESISTANCE 2 (.1...		Potri.010G109100 [exp]	6.70	0.9511
AT1G13260	AP2_ERF	EDF4, RAV1	ETHYLENE RESPONSE DNA BINDING ...		Potri.015G015800 [exp]	12.40	0.9597
					Potri.015G034182 [exp]	21.44	0.9569
					Potri.013G045333 [exp]	32.17	0.9447
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.011G149700 [exp]	32.40	0.9342
					Potri.004G206700 [exp]	35.15	0.9489
AT5G07100	WRKY	WRKY26	WRKY DNA-binding protein 26 (....		Potri.003G222501 [exp]	41.78	0.9012
					Potri.001G131600 [exp]	43.87	0.9337

Compare expression of checked genes

Potri.011G155900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.