Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20800 597 / 0 FAD-binding Berberine family protein (.1) AT1G26420 586 / 0 FAD-binding Berberine family protein (.1) AT1G26390 583 / 0 FAD-binding Berberine family protein (.1) AT1G26380 580 / 0 FAD-binding Berberine family protein (.1) AT1G26410 569 / 0 FAD-binding Berberine family protein (.1) AT1G26400 568 / 0 FAD-binding Berberine family protein (.1) AT1G34575 554 / 0 FAD-binding Berberine family protein (.1) AT1G30700 542 / 0 FAD-binding Berberine family protein (.1) AT1G30710 536 / 0 FAD-binding Berberine family protein (.1) AT1G30720 518 / 2e-180 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459200 [exp] 858 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 758 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 723 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 720 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 646 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 586 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 566 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 565 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 551 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023374 [exp] 539 / 0 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 533 / 0 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 526 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 525 / 0 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 517 / 3e-180 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 515 / 2e-179 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 505 / 3e-175 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 473 / 2e-162 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10018119 [exp] 471 / 4e-162 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 470 / 5e-161 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G156000.1 pacid=42781526 polypeptide=Potri.011G156000.1.p locus=Potri.011G156000 ID=Potri.011G156000.1.v4.1 annot-version=v4.1 ATGAAGGCTTCAATGTCTCTGAGACTCTTAGTATGTTCACTTCTTTTGGTCTTAGTACCGCTAGCAACTTCTGATACATCTCTTGACAGGTTTCTAAAAT GCCTTCCTAGCCACAGTGATTCCTCTTACCCTGTTTCTAGAGCCACTTACAGGATTACTAATTCCTCTTTCGAACCTACTTTGCGAGCATATGCAAAAGC CAGCAGATTTCTAACCTCAACAACCCCGAAACCGCTTGCAATCATAGCTGCCACGCATGAATCCCATGTCCAAGCAACTGTTATTTGTGCAAAGTCTAAT GGCTTGCAAATCAGAATCCGTAGTGGTGGCCATGACTATGAAGGCCTTTCATACGTATCTAATGTTCCGTTTGTCATTCTTGATACGTTTAACCTCCGTT CTATCGACATAGATGTTGCGGGGAAGACAGCTTGGATTCAATCCGGGGCAACTACCGGTGAACTTTACTATAACATTGCCAATAAGAGCAATGTGCTTGC CTTTCCGGCTGGTGTTTGCTTGACTCTTGGTGCTGGAGGACACTTCAGTGGTGGGGGTTATGGGCCTTTGATGAGAAAACATGGTCTTTCGATTGATAAT ATCGTCGACGCGAAAATAGTTGATGTCAATGGCAAGATCCTTGATAGAAAGTCCATGGGAGAAGATTTGTTTTGGGCAATCAGGGGAGGTGGTGGTGCAA GCTTTGGTGTCATCCTTTCTTGGAAGATCAATTTGGTTGATGTTCCTCCCAAAGTGACAACATTTACTGTCTCTAAGACGTTGGAGCAAGGTGCAACGGA TGTTGTTTACCGGTGGCAAGAAGTTGCTAGTAAACTAGACAAAGAACTTTTCATAAGAGTCATGCCACGGGTAGTCGATGGAAGCTCCGGGAGTAACAAG ACTGTTACGGTTTCCTTCATTGGCCTCTTTCTAGGACCGAGCTGCAAACTTCTTCCCTTGATGAAAAATAGCTTCCCTGAATTGGGTTTGCAACAGAAAG ATTGCAATGAAATGAGCTGGGTAGAATCCACACTTTACTGGTTCGGTCTTCCAAATGGAACATCCATTGAAACTCTACTCAATAGGCCTACCCGAGCAAG CTTTTTCAAAAGGAAATCTGATTATGTAAAAAGAGCCATCCCAAAGAAAGGCTTGGAAAAAATATGGCAGACGATGATCAAGGTAGAGCGAGTATGGATG CAATGGAATCCTTATGGAGGAAGAATGGATGAGATTCCAGCTACAGCAACTGCATTTCCTCACAGAGCTGGAAACCTGTTCAAGATTCAGTACTCCGTAG ACTGGAGTGATCAAGAAGGAATTGAGGCTGCCAACCATCACATAGATTTGATAACACAATTGTATGATACAATGACACCATATGCGAGCAGCAATCCAAG GGAGGCATTTCTCAACTATAGAGATGTTGATATTGGTAGCAACCCTGGCAACCAGACCAGCTTTGAGAAAGCTAAAGTCTATGGCAGCAAGCTTTTCAAG AACAACTTTATAAGATTGGTGAAAGTCAAGTCAAGGGTAGATCCTGATGATTTCTTCAAGTATGAACAAAGTATTCCAGCTAGTTTGAAATGA
AA sequence Show only first row Show all	>Potri.011G156000.1 pacid=42781526 polypeptide=Potri.011G156000.1.p locus=Potri.011G156000 ID=Potri.011G156000.1.v4.1 annot-version=v4.1 MKASMSLRLLVCSLLLVLVPLATSDTSLDRFLKCLPSHSDSSYPVSRATYRITNSSFEPTLRAYAKASRFLTSTTPKPLAIIAATHESHVQATVICAKSN GLQIRIRSGGHDYEGLSYVSNVPFVILDTFNLRSIDIDVAGKTAWIQSGATTGELYYNIANKSNVLAFPAGVCLTLGAGGHFSGGGYGPLMRKHGLSIDN IVDAKIVDVNGKILDRKSMGEDLFWAIRGGGGASFGVILSWKINLVDVPPKVTTFTVSKTLEQGATDVVYRWQEVASKLDKELFIRVMPRVVDGSSGSNK TVTVSFIGLFLGPSCKLLPLMKNSFPELGLQQKDCNEMSWVESTLYWFGLPNGTSIETLLNRPTRASFFKRKSDYVKRAIPKKGLEKIWQTMIKVERVWM QWNPYGGRMDEIPATATAFPHRAGNLFKIQYSVDWSDQEGIEAANHHIDLITQLYDTMTPYASSNPREAFLNYRDVDIGSNPGNQTSFEKAKVYGSKLFK NNFIRLVKVKSRVDPDDFFKYEQSIPASLK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20800			FAD-binding Berberine family p...		Potri.011G156000 [exp]	0	1
AT2G44930			Plant protein of unknown funct...		Potri.005G007500 [exp]	11.83	0.8426
AT3G01190			Peroxidase superfamily protein...		Potri.004G023200 [exp]	14.93	0.8634
AT2G19210			Leucine-rich repeat transmembr...		Potri.013G030800 [exp]	29.39	0.8444
AT5G62170			unknown protein		Potri.012G132900 [exp]	39.19	0.7335
AT1G15125			S-adenosyl-L-methionine-depend...		Potri.012G049900 [exp]	45.43	0.8350
AT3G16180			Major facilitator superfamily ...		Potri.018G040400 [exp]	50.29	0.8163
AT1G04040			HAD superfamily, subfamily III...		Potri.010G066500 [exp]	53.23	0.8139
AT5G06905		CYP712A2	"cytochrome P450, family 712, ...		Potri.016G050200 [exp]	55.85	0.8257	CYP712.2
					Potri.004G009800 [exp]	59.46	0.8215
AT3G05980			unknown protein		Potri.008G150300 [exp]	70.82	0.7931

Compare expression of checked genes

Potri.011G156000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.