Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G06650 430 / 5e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G06620 427 / 9e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G06640 422 / 8e-148 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT2G30830 414 / 9e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G30840 408 / 2e-142 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G04350 399 / 5e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59530 395 / 3e-137 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT2G25450 389 / 1e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G59540 388 / 2e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) AT1G03410 387 / 1e-133 2A6 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G165400 [exp] 502 / 2e-179 AT1G06620 444 / 1e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073166 [exp] 468 / 4e-166 AT1G06620 470 / 7e-167 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073300 [exp] 456 / 5e-161 AT1G06620 455 / 7e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073232 [exp] 437 / 1e-153 AT1G06620 402 / 7e-140 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.010G073100 [exp] 410 / 3e-143 AT1G06650 414 / 2e-144 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Potri.013G045000 [exp] 363 / 2e-124 AT1G06620 369 / 6e-127 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G135800 [exp] 356 / 1e-121 AT1G06620 323 / 1e-108 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.002G040700 [exp] 340 / 2e-115 AT1G06620 330 / 2e-111 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.017G136000 [exp] 333 / 7e-113 AT1G06620 314 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022189 [exp] 508 / 0 AT1G06620 418 / 3e-146 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10023499 [exp] 427 / 2e-149 AT1G06620 400 / 2e-139 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040382 [exp] 418 / 3e-146 AT1G06620 411 / 2e-143 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022191 [exp] 411 / 2e-143 AT1G06620 456 / 3e-161 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10040380 [exp] 409 / 1e-142 AT1G06620 387 / 4e-134 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021943 [exp] 408 / 6e-142 AT1G06620 443 / 5e-156 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022195 [exp] 398 / 3e-138 AT1G06620 432 / 1e-151 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10021203 [exp] 394 / 7e-137 AT1G06620 416 / 2e-145 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10027585 [exp] 394 / 1e-136 AT1G06620 429 / 3e-150 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10022196 [exp] 393 / 2e-136 AT5G59530 420 / 5e-147 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G156200.1 pacid=42781643 polypeptide=Potri.011G156200.1.p locus=Potri.011G156200 ID=Potri.011G156200.1.v4.1 annot-version=v4.1 ATGGTGATCAAAAGCTCAGCTGAAGTTCAAGAATCAAACTATGACAAAGAAAGTCAACTCAAAGCTTTTGATGACACGAGAACTGGAGTGAAGGGTCTAA TAGATAATGGAATTACCAAGATTCCAAAGATATTCGTTCATGACAAAAGATCAGATGTTTCAAGTGATTCTGATCAGTCTGCGGCTGTTCCATTGATAGA CTTCGAAGGCATAGATGAAGATAGAAGTCAACGTGCAAAGGTAGTCGAGGGAGTAAGAGATGCTTGTGCCGAGTGGGGTTTCTTTCAAGTGGTCAATCAT GGAATCCCAGTTAGTGTTTTGGAGGAAATGATTGGTGGGGTAGCTAGGTTTCATGAGCAAGATAGTGAAGTGAAGAAAGAATGGTATTCAAGGGATTACA CAAGGAAGGTGCTTTATAATTCAAATTTTGATCTTTATCAAGCCCCAGCTGCCAATTGGAGAGATACTTTGAGTTGTGTCATGGCTCCTCGCCAGCCGAA TCCCCATGACTTGCCTGATGTGTGCAGAGATATCATGAATGATTACTCAAACAAAGTAATGGTTTTAGCACAAAGATTATTCGAATTGCTGTCAGAAGCA CTGGGACTTGATCCTAATTACCTTAAAGACATACACTGTGCAGAGGGACTCTTTTTTCTGGGCCATTACTACCCAGCATGTCCTGAACCAGATTTGACTT TTGGCACTAGCAGCCATTCTGATAGTAGCTTCCTCACTGTTCTTGTACAAGACCAAATTGGTGGCCTCCAAGTCCTTCATGAAAATCAATGGGTTGATCT TAACCCCATTCCAGGAGCTCTTGTTATAAACCTGGGAGACATGTTACAGTTAATTTCGAATGACAGATTTATTAGTGTCCAGCACAGAGTGCTAGCAAGA ACTGTAGGTCCAAGAATTTCTGTGGCATGCTTTATAAGACAACACCTTCCGCCTGAGAATGCCTCGAGACTATATGGGCCAATCAAGGAGTTGCTATCAG AAGAAAGCCCAGCAATCTACCGAGAAACCACTGTGAAGGACTTGGTAACCCACTACTATGCAAAAGGGCTCGATGGGATCTCTGCATTGGAGCATTTCAA GCTGTGA
AA sequence Show only first row Show all	>Potri.011G156200.1 pacid=42781643 polypeptide=Potri.011G156200.1.p locus=Potri.011G156200 ID=Potri.011G156200.1.v4.1 annot-version=v4.1 MVIKSSAEVQESNYDKESQLKAFDDTRTGVKGLIDNGITKIPKIFVHDKRSDVSSDSDQSAAVPLIDFEGIDEDRSQRAKVVEGVRDACAEWGFFQVVNH GIPVSVLEEMIGGVARFHEQDSEVKKEWYSRDYTRKVLYNSNFDLYQAPAANWRDTLSCVMAPRQPNPHDLPDVCRDIMNDYSNKVMVLAQRLFELLSEA LGLDPNYLKDIHCAEGLFFLGHYYPACPEPDLTFGTSSHSDSSFLTVLVQDQIGGLQVLHENQWVDLNPIPGALVINLGDMLQLISNDRFISVQHRVLAR TVGPRISVACFIRQHLPPENASRLYGPIKELLSEESPAIYRETTVKDLVTHYYAKGLDGISALEHFKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G06650			2-oxoglutarate (2OG) and Fe(II...		Potri.011G156200 [exp]	0	1
AT2G43500		NLP8	Plant regulator RWP-RK family ...		Potri.007G133400 [exp]	2.00	0.8991
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.007G075000 [exp]	10.58	0.8972
AT3G17700		ATCNGC20, CNBT1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Potri.015G034000 [exp]	11.40	0.8585	ATCNGC19.5
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038800 [exp]	12.00	0.8449
AT1G68940			Armadillo/beta-catenin-like re...		Potri.003G201000 [exp]	12.04	0.8802
AT5G64430			Octicosapeptide/Phox/Bem1p fam...		Potri.009G080200 [exp]	13.52	0.8229
AT3G12480	CCAAT	NF-YC11	"nuclear factor Y, subunit C11...		Potri.003G192100 [exp]	14.24	0.8377
AT3G01400			ARM repeat superfamily protein...		Potri.014G016400 [exp]	14.69	0.8335
AT4G16480		ATINT4	inositol transporter 4 (.1)		Potri.006G015300 [exp]	16.30	0.8330
AT2G30990			Protein of unknown function (D...		Potri.014G142800 [exp]	16.73	0.8624

Compare expression of checked genes

Potri.011G156200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.