Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G25260 353 / 5e-125 Ribosomal protein L10 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G460100 [exp] 450 / 2e-163 AT1G25260 352 / 1e-124 Ribosomal protein L10 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043280 [exp] 396 / 7e-142 AT1G25260 351 / 3e-124 Ribosomal protein L10 family protein (.1) Lus10030073 [exp] 386 / 8e-138 AT1G25260 343 / 5e-121 Ribosomal protein L10 family protein (.1) Lus10019424 [exp] 374 / 2e-126 AT2G26830 471 / 1e-161 embryo defective 1187, Protein kinase superfamily protein (.1) Lus10001072 [exp] 147 / 2e-45 AT1G25260 122 / 5e-36 Ribosomal protein L10 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00466 [poplar] [flax] Ribosomal_L10 Ribosomal protein L10
Representative CDS sequence Show only first row Show all	>Potri.011G156300.1 pacid=42780767 polypeptide=Potri.011G156300.1.p locus=Potri.011G156300 ID=Potri.011G156300.1.v4.1 annot-version=v4.1 ATGCCTAAGTCTAAGCGTAACAGGCCAGTTACATTATCAAAAACAAAGAAGAAGGGGAGGGAGCATAAAGAGTCTATAGTGAATTCGATAAGGGATGCTG TGGAGAAATACAATTCTATTTATGTGTTTAGTTTTGAAAACATGAGGAATCTCAAATTCAAGGAGTTCAGAGAACAGCATAAATTAACCAGCAGATTCTT CCTTGGGTCAAACAAAGTGATGCAGGTTTCTCTGGGCCGATCTGCTGCTGATGAAATCAGGCCGGGTCTTCACAAAGTTTCTAAGCTTCTATGTGGTGAT TCTGGACTTTTTCTTACCAACTTGTCAAGAGAAGAAGTTGAAAGGTTGTTTAATGAGTATGAAGAATACGACTTTGCAAGGACAGGAACCACTGCAACAG AAACGGTGGAACTTAAGGAAGGTCCCCTGGAACAGTTTACTCATGAGATGGAGCCCTTTTTGCGCAAGCAAGGGATGCCTGTTCGGTTGAATAAGGGTGT GATAGACCTTGTTTCAAACTTTGTTGTCTGTGAAGAGGGGAAGCCTCTCTCGCCTGAGTCTTCTCGCATACTGCGCTTGTTAGGCACCAAGATGGCCACC TTCCGACTTCACTTAATTTGCCGATGGAGCCCTGAGGATTTTGAGCTTTATAGAGAAGGTCTAGATGAATCAGATGTTGAATCAGCATAA
AA sequence Show only first row Show all	>Potri.011G156300.1 pacid=42780767 polypeptide=Potri.011G156300.1.p locus=Potri.011G156300 ID=Potri.011G156300.1.v4.1 annot-version=v4.1 MPKSKRNRPVTLSKTKKKGREHKESIVNSIRDAVEKYNSIYVFSFENMRNLKFKEFREQHKLTSRFFLGSNKVMQVSLGRSAADEIRPGLHKVSKLLCGD SGLFLTNLSREEVERLFNEYEEYDFARTGTTATETVELKEGPLEQFTHEMEPFLRKQGMPVRLNKGVIDLVSNFVVCEEGKPLSPESSRILRLLGTKMAT FRLHLICRWSPEDFELYREGLDESDVESA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G25260			Ribosomal protein L10 family p...		Potri.011G156300 [exp]	0	1
AT3G15460			Ribosomal RNA processing Brix ...		Potri.011G122200 [exp]	2.44	0.8707
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Potri.015G147500 [exp]	3.46	0.8858
AT3G23620			Ribosomal RNA processing Brix ...		Potri.015G088700 [exp]	4.47	0.8715
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	7.68	0.8895	RPL35.2
AT5G67240		SDN3	small RNA degrading nuclease 3...		Potri.007G048000 [exp]	9.16	0.8298
AT5G08180			Ribosomal protein L7Ae/L30e/S1...		Potri.008G110100 [exp]	9.59	0.8884
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	9.79	0.8461
AT4G17520			Hyaluronan / mRNA binding fami...		Potri.001G153000 [exp]	11.53	0.8655
AT5G39740		OLI7, RPL5B	OLIGOCELLULA 7, ribosomal prot...		Potri.014G197100 [exp]	17.49	0.8633
AT5G59240			Ribosomal protein S8e family p...		Potri.009G056900 [exp]	18.76	0.8833	Pt-RPS8.2

Compare expression of checked genes

Potri.011G156300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.