Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G18570 334 / 4e-104 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G25690 338 / 2e-103 AtCHUP1, CHUP1 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) AT1G48280 278 / 4e-84 hydroxyproline-rich glycoprotein family protein (.1) AT1G07120 236 / 3e-70 unknown protein AT1G52080 65 / 1e-10 AR791 actin binding protein family (.1) AT4G04980 57 / 7e-08 unknown protein AT1G61080 54 / 5e-07 Hydroxyproline-rich glycoprotein family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G460300 [exp] 1389 / 0 AT3G25690 345 / 3e-106 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.004G054900 [exp] 352 / 2e-111 AT4G18570 420 / 1e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G130800 [exp] 347 / 8e-106 AT3G25690 1030 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.011G064500 [exp] 335 / 1e-104 AT4G18570 432 / 2e-144 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G073600 [exp] 294 / 2e-91 AT1G07120 434 / 4e-151 unknown protein Potri.001G279000 [exp] 293 / 5e-91 AT1G07120 440 / 2e-153 unknown protein Potri.010G003100 [exp] 282 / 1e-85 AT1G48280 356 / 2e-116 hydroxyproline-rich glycoprotein family protein (.1) Potri.001G191300 [exp] 74 / 3e-13 AT1G52080 349 / 3e-112 actin binding protein family (.1) Potri.003G047200 [exp] 72 / 7e-13 AT1G52080 348 / 3e-112 actin binding protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000986 [exp] 352 / 8e-112 AT4G18570 501 / 1e-171 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025419 [exp] 342 / 2e-107 AT4G18570 565 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015292 [exp] 341 / 8e-107 AT4G18570 568 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10034264 [exp] 338 / 4e-102 AT3G25690 1230 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10034382 [exp] 337 / 1e-101 AT3G25690 1221 / 0.0 Arabidopsis thaliana CHLOROPLAST UNUSUAL POSITIONING 1, Hydroxyproline-rich glycoprotein family protein (.1.2.3) Lus10031863 [exp] 245 / 3e-73 AT1G07120 393 / 2e-135 unknown protein Lus10031293 [exp] 157 / 3e-42 AT1G07120 267 / 3e-87 unknown protein Lus10038307 [exp] 76 / 1e-13 AT1G11070 330 / 2e-99 unknown protein Lus10018473 [exp] 68 / 3e-11 AT4G04980 347 / 1e-104 unknown protein Lus10011209 [exp] 66 / 1e-10 AT4G04980 336 / 2e-100 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G156500.1 pacid=42781981 polypeptide=Potri.011G156500.1.p locus=Potri.011G156500 ID=Potri.011G156500.1.v4.1 annot-version=v4.1 ATGAGAGAAGAAAACACAGTTGAAACTAAATCGAAAGCAGTAAAATTTGCTGATCAAAACCAAGCACCAAAGCCACAAAACATTAAAGGAAACAACAACA ACAATGGTTCAAAGATCAAGTCTTCATGGGGTTCACATATAGTAAAAGGCTTCACAGCAGATAAAAAGACCAAAACGCAAACAATCACAGTAACAGCCAA GAGACTTCCACTAGCAAGCTCAGAGACCACAAAACAAAAGAACTCTCTTGTGAATTCTCATTCAAGAGTCAAGAGATCACTTATTGGTGATTTAACTTGC TCAGTTACAGGAAGCCAGGTGCACCCAAAAGCCTACCAGGCCAATCACAGGAGACAATCTTCAGGGTCAAGAGATTTGTTTGTGGAATTAGACCAATTAA GGAGCTTGCTTCAAGAATCAAAAGAAAGGGAATTTAAGTTACAAGCAGAGCTATCAGAGGTTAAGAGGAATGGAAGAGTAGTGGATCTTGAAAGGGAACT TGAAGCTAGAAGAAACGAAGTGGATGAGCTTTGTAAGAGAATTGGGGTTTTGGAGTCTGAAAAAAGTGGTCTTTGTGAACAAGTGAATGAGTTGTGTTTG ATTTCAGAGAAGAGAAGTGAAGAGGTATTGAAAAGGGAAGGGAATGAGAGTTCAGTGGGGAATCTTGAAATGGAAGTTGTGGAATTGAGGAGATTGAATA AGGAGCTGCAGATGGATAAGAGGAATCTTGCTTGCAAGCTCTCTTCTTTGGAGTCTCAATTGGCTTCTTTTGCCAGGTCTTCTGAGAGTGATGTTGTTGC AAAAATAAAAGCTGAGACATCTTTGCTAAGGCACACAAATGAAGATTTGTGTAAACAAGTTGAGGGTCTACAGATGAGCAGACTAAATGAGGTAGAGGAG CTAGCTTATCTGAGGTGGGTCAATTCATGTTTAAGAGATGAATTGCGTAATTCATGCTCAACGATGAATTCTGACAAGGCCTCAAGCCCCAAATCGGTAG AGAGGAGTAATGAATCTGCTGGCTCAATTTCTTGCCAGAGTAATGACTACTTAGAAAGTAATAGTAAAATGAGACTGGATTTTATTAAAAAGTTGAAGAA ATGGCCTATTACTGATGAAGATTTGCCAAATTTAGAATGCCAAGATAAAAATTGGGTCCACTCGGAAGATGGGAGAAGTCCTAGAAGAAGACACTCTATA AGCGGATCAAAGTTCTGTTTAGAAGATTTGGCACCGAATAGGAGAAGGCAATCTGATGTTTTTATGTGTATAAAGGAAATGGAAAACGAAGTAGAGCTTG TAAGTTCCGAAAAGTATGAGTTGGATATAATGCAAAGACCCCAAATCCTTGCAAACTGCCAAGAGACCAACAAAATTGTAGGTCCATTAGATGTCGAGAA AAGGACTTTGCGAGTTCCAAATCCCCCTCCAAGACCCTCATGTTCTGTTTCTACTGGACCTAAAGAGGAAGTTCAAGCTCAAGTTCCACTCCCGCCTCCG CCTCCGCCTCCGCCTCCCCCGCCACCGCCTCCGAAGTTCTCAGTGAGGAGCACTACAGCAGGAGTGGTGCAGCGAGCACCTCAAGTTGTAGAGTTTTACC ATTCATTGATGAAGAGGGACTCCAGAAAGGAGTCTTCAAATGGAGGAATCTGCGAAGCCTCAGATGTTGCGAATGTTCGGAGCAACATGATTGGTGAGAT TGAGAACCGGTCATCACATTTGCTTGCTATTAAGGCAGATATTGAAACTCAAGGAGAATTTGTCAATTCTCTGATCAGAGAAGTCAACAATGCTGTTTAC CAGAACATTGAAGATGTTGTAGCATTTGTGAAGTGGCTTGATGATGAACTTGGCTTTCTTGTGGATGAAAGGGCAGTCCTGAAGCACTTTGATTGGCCAG AAAAGAAAGCTGACACATTGAGAGAAGCAGCATTTGGGTTTAGTGATCTCAAGAAATTGGAGTCTGAGGTGTCTTACTACAAGGATGATCCCCGAGTTCC ATGTGACCTTGCTCTAAAGAAAATGGTTGCTTTGTCTGAGAAGATGGAACATACAGTTTATAACCTTCTACGAACAAGAGAGTCCTTGATGCGCAATTGC AAAGAATCCCAAATTCCCTCGGATTGGATGCTTGACAATGGGATTATTAGCAAGATAAAGTTTGGCTCAGTTAAGTTGGCGAAGAAGTACATGAAGAGGG TAGCCACGGAAATCCAGTCGAAGGCAGCAGCAGCGCTAGAAAAAGACCCTGCTCTGGACTATATGCTACTTCAAGGGGTTAGATTTGCTTTCAGAATCCA TCAGTTTGCTGGAGGATTTGATGCAGAAACAATGCATGCGTTTGAGGAACTTCGCAACCTTGCTCACCTGCTTAACAAAAAGTAA
AA sequence Show only first row Show all	>Potri.011G156500.1 pacid=42781981 polypeptide=Potri.011G156500.1.p locus=Potri.011G156500 ID=Potri.011G156500.1.v4.1 annot-version=v4.1 MREENTVETKSKAVKFADQNQAPKPQNIKGNNNNNGSKIKSSWGSHIVKGFTADKKTKTQTITVTAKRLPLASSETTKQKNSLVNSHSRVKRSLIGDLTC SVTGSQVHPKAYQANHRRQSSGSRDLFVELDQLRSLLQESKEREFKLQAELSEVKRNGRVVDLERELEARRNEVDELCKRIGVLESEKSGLCEQVNELCL ISEKRSEEVLKREGNESSVGNLEMEVVELRRLNKELQMDKRNLACKLSSLESQLASFARSSESDVVAKIKAETSLLRHTNEDLCKQVEGLQMSRLNEVEE LAYLRWVNSCLRDELRNSCSTMNSDKASSPKSVERSNESAGSISCQSNDYLESNSKMRLDFIKKLKKWPITDEDLPNLECQDKNWVHSEDGRSPRRRHSI SGSKFCLEDLAPNRRRQSDVFMCIKEMENEVELVSSEKYELDIMQRPQILANCQETNKIVGPLDVEKRTLRVPNPPPRPSCSVSTGPKEEVQAQVPLPPP PPPPPPPPPPPKFSVRSTTAGVVQRAPQVVEFYHSLMKRDSRKESSNGGICEASDVANVRSNMIGEIENRSSHLLAIKADIETQGEFVNSLIREVNNAVY QNIEDVVAFVKWLDDELGFLVDERAVLKHFDWPEKKADTLREAAFGFSDLKKLESEVSYYKDDPRVPCDLALKKMVALSEKMEHTVYNLLRTRESLMRNC KESQIPSDWMLDNGIISKIKFGSVKLAKKYMKRVATEIQSKAAAALEKDPALDYMLLQGVRFAFRIHQFAGGFDAETMHAFEELRNLAHLLNKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.011G156500 [exp]	0	1
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Potri.010G196000 [exp]	1.41	0.9214
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.015G131400 [exp]	6.24	0.8924
AT4G17000			unknown protein		Potri.001G287800 [exp]	10.95	0.9112
AT2G37420			ATP binding microtubule motor ...		Potri.006G082900 [exp]	11.48	0.9097
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	18.43	0.9054
AT5G60930			P-loop containing nucleoside t...		Potri.002G106000 [exp]	18.76	0.9083
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Potri.014G168100 [exp]	23.36	0.8063
AT4G21820			binding;calmodulin binding (.1...		Potri.004G017500 [exp]	25.63	0.8972
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.014G070100 [exp]	25.69	0.8712
AT5G22930			Protein of unknown function (D...		Potri.009G006000 [exp]	26.83	0.8257

Compare expression of checked genes

Potri.011G156500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.