Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21300 841 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G18750 488 / 5e-160 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 482 / 2e-158 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G57430 466 / 3e-151 OTP84 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G63370 465 / 9e-151 OTP86 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G09040 468 / 1e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G13650 469 / 2e-150 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 460 / 2e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G03580 460 / 4e-149 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G27610 452 / 3e-146 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G067000 [exp] 528 / 3e-176 AT1G18485 500 / 8e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 500 / 2e-164 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G047600 [exp] 500 / 4e-163 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G067500 [exp] 499 / 2e-162 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G058900 [exp] 499 / 1e-161 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G047800 [exp] 484 / 2e-157 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.012G080200 [exp] 478 / 8e-157 AT1G11290 447 / 3e-145 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 476 / 8e-156 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G215500 [exp] 478 / 4e-155 AT3G63370 922 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008967 [exp] 999 / 0 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028855 [exp] 994 / 0 AT4G21300 873 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004081 [exp] 487 / 1e-158 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001220 [exp] 484 / 3e-158 AT3G57430 1110 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036071 [exp] 481 / 6e-158 AT1G18485 464 / 5e-151 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038400 [exp] 483 / 1e-157 AT3G57430 1097 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013991 [exp] 484 / 2e-157 AT3G57430 632 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015414 [exp] 480 / 1e-155 AT3G57430 629 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 84, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017446 [exp] 472 / 4e-154 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014707 [exp] 474 / 1e-153 AT3G63370 893 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 86, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.011G156800.2 pacid=42782375 polypeptide=Potri.011G156800.2.p locus=Potri.011G156800 ID=Potri.011G156800.2.v4.1 annot-version=v4.1 ATGTCCTACACAAAACTACCTTCAATACACAGACATTTCACAAATACTTGGCTAAAGTCGAAGTCTTTACACACAAACTTCAAAAAAGGCTTTAAAGATC CAATCTTTTTAAGCACCGAACACTCTTTAGCCACCCAACTTGAATCAATCTTGCAAAAACCAAGTACAAAACTTGAACAAGCAAAACAACTACATGCCCA ATTCGTTGTTAGTGGAATAAACATCACCAACAATGGCTTGTTGGGTGGGAAAATGTTGGGTATGTATGTGCTATGTAATAGTTTCGTGGATGCTAAGAAG CTTTTTTATCAGCTTGAGTTTTATTATGCCATGCCTTGGAATTGGATGATTAGAGGGTTAGTGAAATTGGGTTGTTTTGATTTTGCTTTATTGTTTTATT TCAAAATGTTGGGTTGTGGTGTGTTTCCTGATAAGTATACTTTCCCTCCTGTGATTAAGTGTTGCACTGGTTTGAATAATGTGAGATTAGGGAAGGTGAT TCAAGATATGATTTTGGAGATGGGTTTTGATTTGGATATGTTTGTTGCTAGTTCTTTGATCAAGTTGTATGCCGATAATGGCTGTATAGAGGATGCTAGG CGCTTTTTTGATAAAATGATTGATAAAGATTGTGTTTTGTGGAATGTGATGATTAACGGTTATGTACAGTGTGGGGAGTCTGATAGTGCTATTAAGTTGT TTAAGGATATGATGAGCTCTGAAGCTAAGCCTGATTCCGTGACGTTTGCTTGTGTTCTTTCTATCTCTTGTTCTGAGGCAATGGTTGAGTATGGTAGACA GCTTCACGGGCTTGTTGTTCGTAGCGGGTTAGATTTTGTTCCTCTGGTGGGGAATACACTAGTGACTGTGTATTCAAAAGGCAGGCAATTGGGCGATGCA CGTAAATTATTTGATATGATGCCTCAGATTGATTTGGTGGTTTGGAATAGGATGATTGGTGGGTATGTACAAAATGGGTTTATGGATGATGCTTCGATGT TGTTTAATGAGATGATATCTGCCGGTATTAAACCAGACTCCATCACTTTTACTAGTTTCCTCCCATCACTTGCTGAGTCATCGAGTCTCAAGCAAATTAA GGAAATTCATGGTTATATAGTGAGGCATGGTGTGATTTTGGATGTGTACTTGAACAGTGCTCTTATTGACTTGTACTTTAAATGCAGGGATGCCGTGATG GCATGCAAGATGTTTAATCTAAGCACAAAATTTGATATTGTTATTTATACGGCTATGATTTCAGGCTATGTGCTTAATGGTATGAATAAGGATGCTTTAG AAATCTTTAGGTGGTTACTTCAAAAGAAAATGATTCCAAATGCTTTAACATTTTCAAGTATTTTGCCAGCATGTGCTGGTTTGGCTGCTATAAAATTGGG GAGAGAATTGCATGGTTACATCATCAAGAATGAGTTAGAAGAGAAATGTCCCGTGGGAAGTGCAATTATGAACATGTATGCAAAATGCGGAAGATTGGAT CTTGCACACCTAATTTTTGGAAGAATTTCCATAAAGGATGCTATTTGTTGGAACTCTATAATCACAAGTTTTTCCCAGGATGGAAAACCAGAGGAGGCCA TTTATCTTTTCCGTCAAATGGGGATGGAAGGAGTGAAGTATGATTGCGTGACTGTTTCAGCTGCTCTCTCTGCTTGTGCAAACATTCCAGCGCTTCATTA TGGGAAAGAGATTCATGGTTTCATGATTAAAGGTGCATTTGAGTCTGACCTTTTTGATATGAGTGCACTGATAAACATGTATGCCAAATGTGGGAAACTA AATATTGCTCGCCTGGTGTTCAACTTGATGCAAGAGAAGAATGAAGTTGCATGGAATAGCATCATTGCTGCTTATGGGTACCATGGTTACCTTGCGGACT CTCTTGCTCTGTTTCATAATATGTTGGAAGAAGGAATTCAGCCAGATCATATCACCTTTCTCACTATATTATCTTCTTGCGGCCATGCTGGACAGGTCGA GGATGGAGTTCGCTACTTCCGCTGCATGACTGAGGAATATGGTATCCCAGCTCAAATGGAGCATTATGCTTGCATGGCAGATTTGTTTGGCCGGGCAGGC CATTTGGATGAAGCGTTTGAAGTCATAACAAGCATGCCATTTCCACCTGCTGCCAGTGTTTGGGGCACATTGCTGGGAGCCTGTCGAGTCCATGGCAATG TTGAACTTGCTGAAGTGGCTTCAAGATATCTACTTGACTTGGAACCAAAAAATTCTGGTTACTATTTATTGCTTACTCATGTACTCGCTGATGCTGGAAA ATGGAGGAGTGTGCATAAGATACAACATTTGATGAAAGAAAGAGGAGTCCAGAAAGTTCCTGGATGCAGTTGGATTGAGGTCAACAACACCACTTGTGTG TTTTTTGCAGCAGATGGAAGTCACCCGGAATCTCCTCAGATCTATTCTTTGCTGAAGAGTCTCCTCCTAGAGTTAAGAAAAGTTGGTTATGTTCCTCAAG CTGTAGCTTGTTTTGGAAATGATTGA
AA sequence Show only first row Show all	>Potri.011G156800.2 pacid=42782375 polypeptide=Potri.011G156800.2.p locus=Potri.011G156800 ID=Potri.011G156800.2.v4.1 annot-version=v4.1 MSYTKLPSIHRHFTNTWLKSKSLHTNFKKGFKDPIFLSTEHSLATQLESILQKPSTKLEQAKQLHAQFVVSGINITNNGLLGGKMLGMYVLCNSFVDAKK LFYQLEFYYAMPWNWMIRGLVKLGCFDFALLFYFKMLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGCIEDAR RFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDA RKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVM ACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCGRLD LAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKL NIARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAG HLDEAFEVITSMPFPPAASVWGTLLGACRVHGNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSWIEVNNTTCV FFAADGSHPESPQIYSLLKSLLLELRKVGYVPQAVACFGND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21300			Tetratricopeptide repeat (TPR)...		Potri.011G156800 [exp]	0	1
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Potri.003G104300 [exp]	1.41	0.8441
AT1G19100			Histidine kinase-, DNA gyrase ...		Potri.012G089000 [exp]	1.73	0.8338
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.007G010500 [exp]	2.64	0.8104
AT5G57990		UBP23	ubiquitin-specific protease 23...		Potri.006G185200 [exp]	6.00	0.7988	UBP23.3
AT2G24350			RNA binding (RRM/RBD/RNP motif...		Potri.012G145050 [exp]	7.07	0.8032
AT4G22760			Tetratricopeptide repeat (TPR)...		Potri.003G116100 [exp]	8.36	0.7927
AT2G38420			Pentatricopeptide repeat (PPR)...		Potri.006G106400 [exp]	9.05	0.7531
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Potri.010G165001 [exp]	9.38	0.8009
AT1G26370		RID1	RNA helicase family protein (....		Potri.008G096800 [exp]	13.00	0.7938
AT1G56440		TPR5	tetratricopeptide repeat 5, Te...		Potri.005G014100 [exp]	14.42	0.8287

Compare expression of checked genes

Potri.011G156800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.