Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73720 948 / 0 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT3G49660 108 / 4e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 105 / 7e-25 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G08390 90 / 1e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT2G21390 90 / 2e-18 Coatomer, alpha subunit (.1) AT1G62020 89 / 2e-18 Coatomer, alpha subunit (.1) AT1G11160 87 / 7e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 87 / 1e-17 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 86 / 2e-17 TAF5 TBP-associated factor 5 (.1) AT5G23430 85 / 4e-17 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G148500 [exp] 117 / 2e-29 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 116 / 8e-29 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 103 / 2e-24 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.010G255400 [exp] 93 / 9e-20 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.008G002300 [exp] 90 / 1e-18 AT5G08390 1006 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 86 / 2e-17 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1) Potri.012G074800 [exp] 86 / 2e-17 AT1G62020 2113 / 0.0 Coatomer, alpha subunit (.1) Potri.018G020200 [exp] 86 / 2e-17 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.010G064600 [exp] 85 / 3e-17 AT1G10580 906 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023381 [exp] 1017 / 0 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10038425 [exp] 1014 / 0 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 117 / 7e-29 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 110 / 1e-26 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 107 / 1e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 103 / 3e-24 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10041007 [exp] 91 / 4e-19 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10025780 [exp] 87 / 1e-17 AT2G21390 1521 / 0.0 Coatomer, alpha subunit (.1) Lus10013452 [exp] 86 / 3e-17 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10024447 [exp] 85 / 4e-17 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.011G156900.1 pacid=42780297 polypeptide=Potri.011G156900.1.p locus=Potri.011G156900 ID=Potri.011G156900.1.v4.1 annot-version=v4.1 ATGGCACTCGAAATCGAAGCTCGCGATGTAATAAAAATTGTGCTGCAGTTCTGCAAAGAACACTCTCTGCACCAAACATTCCAAACCCTACAAAACGAAT GTCAAGTCTCCTTAAACACAGTTGACAGCATTGAAACATTCGTGGCAGACATAAACGGAGGAAGATGGGACACGATCTTGCCTCAAGTGGCGCAACTTAA GTTGCCGAGGAATAAGTTAGAAGATTTGTACGAACAGATTGTGTTAGAAATGATTGAGTTACGAGAATTGGATACTGCTCGTGCTATTTTAAGACAGACT CAAGCTATGGGTGTCATGAAGCAGGAACAGCCGGAGAGATATTTGAGGCTCGAGCATTTGCTTGTTAGAACTTATTTTGATCCTAATGAGGCTTATCAAG AATCAACCAAGGAGAAACGACGTGCACAGATTGCTCAAGCCCTTGCTGCAGAAGTTAGTGTGGTTCCACCTTCAAGATTAATGGCTCTAATTGGTCAGGC TCTCAAGTGGCAGCAACACCAAGGGTTGCTTCCTCCGGGAACTCAGTTTGATCTATTCCGAGGAACAGCAGCCATGAAACAAGATATTGATGATATGTAC CCAACAACTCTTACACATACCATAAAGTTTGGAACAAAAAGTCATGCTGAATGTGCTAAATTCTCTCCAGATGGGCAATTCCTTGTTTCATGTTCTATTG ATGGGTTCATTGAGGTGTGGGATTATGTAAGTGGAAAGCTCAAAAAGGATCTTCAGTACCAGGCTGATGAAACTTTTATGATGCACGATGATCCTGTCCT CTGTGTTGATTTTAGCCGAGATTCTGAGATGCTTGCATCTGGAGCGAAAGATGGGAAGATCAAAGTCTGGCGTATAAGGACTGGTCAATGCTTGCGTCGT CTTGAACGTGCACATTCTCAGGGAGTCACAAGTCTTGCTTTCTCTCGTGATGGAAGCCAGCTGCTAAGTGCATCCTTTGACAGCACAGCGAGAATTCATG GCCTAAAATCTGGGAAGTTGTTAAAAGAATTCCGTGGACATGCATCCTATGTGAATGATGCCATCTTCACTAGTGATGGGACTCGTGTTATTACTGCCTC CAGTGATTGCACGGTCAAGGTTTGGGATATGAAGAGTACAGACTGTATACATACATTCAGGCCACCACCGCCATTGAGGGGAGGTGATGCTTCTGTGAAC TCTGTTCATCTTTTCCCAAAAAACACTGATCATATTGTTGTATGTAACAAGACATCATCGATATGCATTATGACACTTCAAGGACAGGTTGTGAAGAGCT TTTCTTCCGGTAAAAGAGAAGGTGGAGATTTTGCTGCAGCCTGTATATCACCAAAAGGGGAATGGATCTACTGTGTTGGTGAAGACAGGAATATTTACTG CTTCAGCTACCAATCTGGCAAACTAGAGCATCTAATGAAGGTTCACGAGAAGGATGTAATAGGCGTGACCCATCATCCTCATAGGAATCTTCTTGCCACC TACAGCGAAGATTCCACAATGAAATTATGGAAGCCATGA
AA sequence Show only first row Show all	>Potri.011G156900.1 pacid=42780297 polypeptide=Potri.011G156900.1.p locus=Potri.011G156900 ID=Potri.011G156900.1.v4.1 annot-version=v4.1 MALEIEARDVIKIVLQFCKEHSLHQTFQTLQNECQVSLNTVDSIETFVADINGGRWDTILPQVAQLKLPRNKLEDLYEQIVLEMIELRELDTARAILRQT QAMGVMKQEQPERYLRLEHLLVRTYFDPNEAYQESTKEKRRAQIAQALAAEVSVVPPSRLMALIGQALKWQQHQGLLPPGTQFDLFRGTAAMKQDIDDMY PTTLTHTIKFGTKSHAECAKFSPDGQFLVSCSIDGFIEVWDYVSGKLKKDLQYQADETFMMHDDPVLCVDFSRDSEMLASGAKDGKIKVWRIRTGQCLRR LERAHSQGVTSLAFSRDGSQLLSASFDSTARIHGLKSGKLLKEFRGHASYVNDAIFTSDGTRVITASSDCTVKVWDMKSTDCIHTFRPPPPLRGGDASVN SVHLFPKNTDHIVVCNKTSSICIMTLQGQVVKSFSSGKREGGDFAAACISPKGEWIYCVGEDRNIYCFSYQSGKLEHLMKVHEKDVIGVTHHPHRNLLAT YSEDSTMKLWKP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73720		SMU1	SUPPRESSORS OF MEC-8 AND UNC-5...		Potri.011G156900 [exp]	0	1
AT4G20980			Eukaryotic translation initiat...		Potri.004G044500 [exp]	5.83	0.7363
AT5G03340			ATPase, AAA-type, CDC48 protei...		Potri.015G080600 [exp]	6.24	0.6645
AT4G39280			phenylalanyl-tRNA synthetase, ...		Potri.004G155000 [exp]	7.48	0.6820
AT4G39380			unknown protein		Potri.007G077700 [exp]	9.74	0.7006
AT5G56680		SYNC1ARATH, SYN...	EMBRYO DEFECTIVE 2755, Class I...		Potri.006G153900 [exp]	10.19	0.7330	Pt-SYNC3.1
AT1G70310		SPDS2	spermidine synthase 2 (.1)		Potri.010G094600 [exp]	12.96	0.7252	SPDSYN2.2
AT3G17465		RPL3P	ribosomal protein L3 plastid (...		Potri.010G002300 [exp]	15.49	0.7070	Pt-RPL3.3
AT3G02870		VTC4	Inositol monophosphatase famil...		Potri.016G011000 [exp]	16.73	0.6319
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	20.49	0.6875
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.010G248900 [exp]	23.15	0.6811

Compare expression of checked genes

Potri.011G156900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.