Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14350 801 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein AT3G23310 791 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G30640 764 / 0 Protein kinase family protein (.1) AT2G20470 750 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G03920 719 / 0 Protein kinase family protein (.1) AT4G33080 659 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) AT2G19400 623 / 0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT5G09890 607 / 0 Protein kinase family protein (.1.2) AT5G62310 276 / 5e-81 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT1G48490 271 / 5e-79 Protein kinase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G167800 [exp] 817 / 0 AT4G14350 905 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.005G226700 [exp] 808 / 0 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.010G070600 [exp] 804 / 0 AT4G14350 894 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Potri.002G036200 [exp] 784 / 0 AT2G20470 857 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.006G224800 [exp] 677 / 0 AT4G33080 832 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1), AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.2) Potri.006G146900 [exp] 658 / 0 AT2G19400 755 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.002G125800 [exp] 619 / 0 AT5G09890 828 / 0.0 Protein kinase family protein (.1.2) Potri.014G028900 [exp] 598 / 0 AT5G09890 796 / 0.0 Protein kinase family protein (.1.2) Potri.015G035600 [exp] 274 / 4e-80 AT3G17850 1543 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011814 [exp] 793 / 0 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10003541 [exp] 778 / 0 AT2G20470 850 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10021176 [exp] 768 / 0 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10033911 [exp] 759 / 0 AT2G20470 831 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005707 [exp] 621 / 0 AT5G09890 853 / 0.0 Protein kinase family protein (.1.2) Lus10042650 [exp] 619 / 0 AT5G09890 857 / 0.0 Protein kinase family protein (.1.2) Lus10031332 [exp] 271 / 6e-79 AT3G17850 1526 / 0.0 Protein kinase superfamily protein (.1) Lus10038912 [exp] 267 / 9e-78 AT5G62310 1483 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10027196 [exp] 267 / 1e-77 AT5G62310 1484 / 0.0 INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Lus10005470 [exp] 259 / 5e-76 AT1G45160 977 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00433 [poplar] [flax] Pkinase_C Protein kinase C terminal domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G157000.6 pacid=42781318 polypeptide=Potri.011G157000.6.p locus=Potri.011G157000 ID=Potri.011G157000.6.v4.1 annot-version=v4.1 ATGGAGTCATCAAGGAGTTGGTTTAAGATATTTAAGCAAGGGAGTAGTAATTCAAAAAAGAAAGAAGCTGCAGCAGAGAGTGTAAAGAAGAATAATAATG GTGGTGTTGGTGTTGTTAATAGTGGTGGTAAGCCACCAATTAATGATGCACCTTCACATGCTACAAAGCAGAAAGTGGATGCAGCTAAACAGTATATTGA GAATCATTATAAAGCTCAGATGAAGAATTTACAGGACAGGAAAGAGAGGAGATGGATGTTGGAGAGGAAGCTTGCAGATGCGGATGTTTCTCGGGAAGAA CAGATGAATATACTGAAGAAGTTTGAGGAGAAGGAAACTGAGTATATGCGTCGTCAAAGACATAAGATGGGGGTTGATGATTTTGAACTTTTGACCATCA TTGGCAGGGGTGCATTTGGGGAGGTGAGACTTTGCAGAGAAAAAACTACTGGCAATGTGTATGCAATGAAAAAGCTCAAGAAATCCGAGATGCTTCGTAG AGGACAGGTGGAACATGTTAAAGCCGAAAGGAATCTCCTTGCCGAGGTTGACAGTACTTGTATCGTCAAGCTCTACTGTTCCTTTCAAGATGATGAATAT TTGTATCTTATCATGGAATATCTCCCTGGAGGTGACATGATGACATTGCTGATGCGCAAGGATACCTTAACTGAGGACGAGGCCAGGTTTTATGTTGGGC AGACAGTTCTTGCAATTGAGTCTATTCACAAGCACAACTACATCCACAGGGATATTAAACCTGATAATTTGTTGCTCGACAAAAATGGCCATATGAAGCT TTCAGATTTTGGGCTGTGTAAGCCCTTAGACAGCAGTAGCTTTCCAAATTTTAGGGAGGATGATTATGCAGGTGGAAGGAACTTGAAACCTTCAGCAGAG GGCAATAAACCTCCTACGCCAAGGCGGACACAGCAGGAACAGCTTGTTCACTGGCAGAAGAATAGGCGAACATTGGCATATTCAACGGTTGGCACTCCAG ACTACATTGCCCCAGAAGTATTATTGAAGAAAGGCTATGGAATGGAGTGTGATTGGTGGTCTCTTGGGGCAATTATGTATGAAATGCTTGTGGGATATCC ACCTTTCTATTCTGAAGAACCTATGTCAACATGTAGAAAGATTGTCAATTGGAGAAATCACTTAAAATTCCCTGAAGAAGCTAAGCTGTCTGTTGAGGCT AAAGACCTTATCCGAAAACTTCTATGCAATGTAGAACAGAGGCTTGGGACCAAAGGAGCTCATGAAATAAAATTACACACATGGTTTAAAGGCACCGAAT GGGACAGATTATATCAGGTAGAAGCTGCTTTTAAACCAGAGGTCAAAGATGAGTTAGATACGCAGAATTTTGAAAAGTTTGAAGAGCTGGGGACTTCTCT GCAATCTTCATCAAAATCTGGTCCGTGGAGAAAGATGCTTCCATCAAAGGATGTGAACTTTGTTGGTTACACTTACAAGAATTACGAGATTGTCAATAAT GATCATGATATGCCATCCGTCGAGTTGAGGAAAAAGAGTACTGCACCAAAGAGACCAACTATCAAGTCATTATTTGAAATACCTGATTCTTCTGACCAGC ATGCTCAAGGAAGCTTTCTAAACCTCTTACCCACCCAAGTCGAGGTATCGGAAAGCCCTGAATTATCTCCGCGGTCCACTCGAACTTCACAACACCATCA CAACCACAAGCCTATAAGAAGATAG
AA sequence Show only first row Show all	>Potri.011G157000.6 pacid=42781318 polypeptide=Potri.011G157000.6.p locus=Potri.011G157000 ID=Potri.011G157000.6.v4.1 annot-version=v4.1 MESSRSWFKIFKQGSSNSKKKEAAAESVKKNNNGGVGVVNSGGKPPINDAPSHATKQKVDAAKQYIENHYKAQMKNLQDRKERRWMLERKLADADVSREE QMNILKKFEEKETEYMRRQRHKMGVDDFELLTIIGRGAFGEVRLCREKTTGNVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSTCIVKLYCSFQDDEY LYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGQTVLAIESIHKHNYIHRDIKPDNLLLDKNGHMKLSDFGLCKPLDSSSFPNFREDDYAGGRNLKPSAE GNKPPTPRRTQQEQLVHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSEEPMSTCRKIVNWRNHLKFPEEAKLSVEA KDLIRKLLCNVEQRLGTKGAHEIKLHTWFKGTEWDRLYQVEAAFKPEVKDELDTQNFEKFEELGTSLQSSSKSGPWRKMLPSKDVNFVGYTYKNYEIVNN DHDMPSVELRKKSTAPKRPTIKSLFEIPDSSDQHAQGSFLNLLPTQVEVSESPELSPRSTRTSQHHHNHKPIRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	0	1
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.014G094200 [exp]	1.41	0.8862
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	1.41	0.8876
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	4.47	0.8722	Pt-IBR5.1
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	6.63	0.8373
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Potri.013G048000 [exp]	7.48	0.8527
					Potri.003G139000 [exp]	7.48	0.8554
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	7.54	0.8748
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	8.06	0.8459
AT5G13660			unknown protein		Potri.006G082800 [exp]	8.94	0.8616
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	9.00	0.8526

Compare expression of checked genes

Potri.011G157000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.