Plant FIBer expression Database

Potri.011G157500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G44450 425 / 5e-150 methyltransferases (.1)
AT1G48600 44 / 0.0001 AtPMEAMT phosphoethanolamine N-methyltransferase, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028142
[exp]
463 / 6e-166 AT5G44450 418 / 4e-148 methyltransferases (.1)
Lus10042846
[exp]
459 / 1e-163 AT5G44450 419 / 4e-148 methyltransferases (.1)
Lus10042832
[exp]
231 / 3e-76 AT5G44450 216 / 2e-70 methyltransferases (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0063 NADP_Rossmann PF08241 Methyltransf_11 Methyltransferase domain
Representative CDS sequence
>Potri.011G157500.3 pacid=42781946 polypeptide=Potri.011G157500.3.p locus=Potri.011G157500 ID=Potri.011G157500.3.v4.1 annot-version=v4.1
ATGCACCTAATTAACACTCATCCGTATAGATTTGGACCTTTATGCTATACCCAAAAACCCTATAAAAAATCCTATCTTTCCCTCCAAACCACAAATTACT
GCCATCCCACGAGATTCCACAAGCACTACACAGCAGCTGCCATACCGTCTCCAATGGAAGCTGCGGGCACAGATTCCGATGGCCGTGAATTCAAAAATCC
AGATGAAATGTGGTTAGAACACACTGGAGACACTAACAAGAAGACTCAATGGTACCGTGATGGTGTTGCTTATTGGGAAGGTGTGGAGGCATCAGTGAAT
GGAGTGTTAGGTGGATATGGGCATGTGAATGATGCTGATGTGAAGGGAAGTGAAGGGTTTCTACAGACCCTTTTAGCTGAACTGTTTGTTGACGGAGGAA
TTGACAGGCATCTTGTTGCTCTTGATTGTGGTTCTGGTATTGGGAGAATCACCAAGAATCTTCTCATAAGGTTTTTCAATGAGGTTGATCTTCTTGAGCC
AGTGTCGCATTTCCTTGATGCTGCCCGTGAAAACTTGGTCCAAGAAAATCATATGGCATTGGATAAGCACAAGGCCACTAATTTTTATTGTGTCCCCCTT
CAGGAATTTACACCAGATGCAGGAAGATATGATGTTATCTGGGTTCAGTGGTGTATTGGGCATCTCACAGATGATGACTTTGTGTCATTTTTCAATAGGG
CTAAGATTGGCCTCAAACCTGGTGGATTTTTTGTCTTGAAGGAGAATCTTGCAAGAAGTGGATTTGTGTTGGACAAAGAAGATCGAAGCATAACCAGGTC
TGATTCATACTTCAAGGGTCTCTTTAGTCGGTGTGGATTGCATCTCTACAAATCAAGGGAACAAAAGGGACTTCCCAAGGAGCTATTTGCTGTGAAGATG
TATGCGTTAACAACTGATATTCCAAAGAGAGTCATTAAGGCCAGATCCAAAGTTCAAGCCAATCGACCTGGGATAATCAAATGA
AA sequence
>Potri.011G157500.3 pacid=42781946 polypeptide=Potri.011G157500.3.p locus=Potri.011G157500 ID=Potri.011G157500.3.v4.1 annot-version=v4.1
MHLINTHPYRFGPLCYTQKPYKKSYLSLQTTNYCHPTRFHKHYTAAAIPSPMEAAGTDSDGREFKNPDEMWLEHTGDTNKKTQWYRDGVAYWEGVEASVN
GVLGGYGHVNDADVKGSEGFLQTLLAELFVDGGIDRHLVALDCGSGIGRITKNLLIRFFNEVDLLEPVSHFLDAARENLVQENHMALDKHKATNFYCVPL
QEFTPDAGRYDVIWVQWCIGHLTDDDFVSFFNRAKIGLKPGGFFVLKENLARSGFVLDKEDRSITRSDSYFKGLFSRCGLHLYKSREQKGLPKELFAVKM
YALTTDIPKRVIKARSKVQANRPGIIK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G44450 methyltransferases (.1) Potri.011G157500
[exp]
0 1
AT2G35840 Sucrose-6F-phosphate phosphohy... Potri.008G013300
[exp]
8.12 0.6750
AT3G14860 NHL domain-containing protein ... Potri.001G387500
[exp]
11.57 0.7295
AT5G65780 ATBCAT-5 branched-chain amino acid amin... Potri.007G008000
[exp]
41.67 0.6339
AT5G16040 Regulator of chromosome conden... Potri.004G101800
[exp]
41.83 0.6312
AT2G32170 S-adenosyl-L-methionine-depend... Potri.006G023400
[exp]
45.36 0.5656
AT4G27490 3'-5'-exoribonuclease family p... Potri.009G010600
[exp]
67.45 0.6078
AT1G11840 ATGLX1 glyoxalase I homolog (.1.2.3.4... Potri.004G013200
[exp]
74.69 0.5758 Pt-ATGLX1.1
AT2G17550 unknown protein Potri.005G101700
[exp]
77.24 0.6074
AT5G54660 HSP20-like chaperones superfam... Potri.001G416200
[exp]
77.35 0.6016
AT5G43700 AUX_IAA IAA4, ATAUX2-11 indole-3-acetic acid inducible... Potri.010G078400
[exp]
78.59 0.5733

Potri.011G157500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.