Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20790 557 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G23950 109 / 3e-25 Leucine-rich repeat protein kinase family protein (.1) AT3G59110 105 / 5e-24 Protein kinase superfamily protein (.1) AT1G34110 106 / 6e-24 Leucine-rich receptor-like protein kinase family protein (.1) AT3G55550 105 / 1e-23 Concanavalin A-like lectin protein kinase family protein (.1) AT1G74360 104 / 2e-23 Leucine-rich repeat protein kinase family protein (.1) AT4G30520 104 / 2e-23 SARK SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE, Leucine-rich repeat protein kinase family protein (.1) AT3G25560 104 / 2e-23 NIK2 NSP-interacting kinase 2 (.1.2.3) AT5G63710 103 / 3e-23 Leucine-rich repeat protein kinase family protein (.1) AT2G20300 103 / 4e-23 ALE2 Abnormal Leaf Shape 2, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G029900 [exp] 117 / 2e-27 AT3G47570 645 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G306000 [exp] 115 / 4e-27 AT5G63710 791 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G068500 [exp] 108 / 1e-24 AT5G46330 505 / 1e-159 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G184100 [exp] 108 / 1e-24 AT2G24130 710 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.003G150000 [exp] 108 / 1e-24 AT3G47570 506 / 4e-162 Leucine-rich repeat protein kinase family protein (.1) Potri.012G084900 [exp] 107 / 3e-24 AT1G15530 734 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Potri.008G110300 [exp] 106 / 3e-24 AT3G25560 918 / 0.0 NSP-interacting kinase 2 (.1.2.3) Potri.002G063300 [exp] 107 / 4e-24 AT1G34110 1400 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.001G042500 [exp] 107 / 4e-24 AT2G24130 703 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018722 [exp] 110 / 2e-25 AT4G02630 642 / 0.0 Protein kinase superfamily protein (.1) Lus10015484 [exp] 110 / 2e-25 AT2G23950 910 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10019963 [exp] 110 / 3e-25 AT2G23950 907 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10024813 [exp] 108 / 5e-25 AT4G02630 632 / 0.0 Protein kinase superfamily protein (.1) Lus10034350 [exp] 105 / 1e-23 AT5G16000 1018 / 0.0 NSP-interacting kinase 1 (.1) Lus10010927 [exp] 102 / 4e-23 AT1G56140 343 / 2e-107 Leucine-rich repeat transmembrane protein kinase (.1) Lus10004277 [exp] 102 / 9e-23 AT5G10530 707 / 0.0 Concanavalin A-like lectin protein kinase family protein (.1) Lus10012664 [exp] 99 / 2e-22 AT4G02630 511 / 0.0 Protein kinase superfamily protein (.1) Lus10040500 [exp] 101 / 3e-22 AT5G06940 1004 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10005103 [exp] 100 / 6e-22 AT5G16000 998 / 0.0 NSP-interacting kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G157600.1 pacid=42782080 polypeptide=Potri.011G157600.1.p locus=Potri.011G157600 ID=Potri.011G157600.1.v4.1 annot-version=v4.1 ATGGCTTCTCCACGTTTTCTCCTTCTTCTGTTCACAACATTATCACTCACAGTTTCTTCAGCAATCTCAGGATCAGTAGTAGAGGACCTTGCAAACTTGC AACCCCCGTCAGATTTCAACACCACAATCATGAAAAACTGTCAACACAATCCTTCTCTCAGATACTGTAACTCCTCTTCTATGGACCTGAAAGAAATCTT CAAGTTCACCATTGTTGCAAGCCATCTTTGCAATGAGTCAAAGAATCCAAATTGTGTCCATTCTTTCGACAACATAGACCTGCGAAACAGGCCGAAGATG GCACCACTCTACTTGTCATACAGTTTCTTTTGGAAATACTGCCCTTTAACCATTCTTTCCATTGATTTGTCAAACATTTCTTTAAAGGGTAGTTTTCCTA AAGAAGTTATATGTTGTGACCAAATCCAGGCTCTTGATTTGAGCCTTAATGGCCTTACCGGAGAATTCCCAATCGAGAGCTTTGCTCCTCTTACCAACCT TACATTTCTCAACCTGTCATATAATTATTTTTCAGAGAGTAAAATCTCAGATTCTCAGTTTTTCAAAAGGTTTAATTCTTCAAGTTTTATTCATTCTGGT ATCCTTCCAAGTGACAGGAACTATACAATCAAGGCCATATTTTTACTAGTTGGATTTCCAATCTGTGTGATTCTAATGGCGGTTTGCTTTGGATGGCTGT GTTTTCAAAGGCCGGATTACTTACCAAGAATGTTTCAAAGAAAGCACAAGTTTACACCGTCAATGCTAAGGGCAGCAACAAATGGGTTTTCAAGAAAAAA CCAGATGGTCAGAAGTGAAGGAGTAGAAATTTATAAGGGAACTTTGCGAGACAGTACTCAAGTCAGGATTGAAATTTACAGGGGTTGCATTTCAAGGGAG AAACGCAAGGAATTTGTTGAGGAGTGCAAGGTTCTTGTTGAACTATGCCACAAGAACTTAGTTCAAGTATTAGGTTGGTGCAGTAACAGAAATCAGAGAG CCATTGTTACTGAATGGACAGATGGAGAGACTATTGAGATGTGGCTATCAGGTTCAGCTCCTCCATGGAAGCAAAGGTTGAAGATGCTAATTGGGGTGGT GGACGGCATGCGTTATTTGCAGGAACATTGGCCTGAAGTTGTGTATGATCTCAGGATAAACAGTGTGTTGCTCTCGGACAATCATGAGCCACTCCTTTCA AGGTTTCAGGTTGGAGATCAATACAGCAACAACAAAAAAATTCACAAGTTTGGAATATTTCTGCTAGAGATCATAACAAATAGGAGGTCACAGGAATTTG AGAGAGGTGAGGCTGGATTGATTGAGTATGTCAGAGATAATTATCCTAAAAACTTGCACAAAGTGATTGATGCAAGAATGAAATTGCCAGAAAATATGTT TGATCAAGCTAAACATGGAATAGAACTGGGATTGATGTGCACTGACCAATCAATCAGCAAACATCCAAGCCTGAATCAGATATCCCATATGATAAACAAA GTCTATGAGTCTTGCCTGGAATTAGCGCCCCAGAACCATAAAAGATCTCATGGAGATGGAGGTAAAGGACACAAACATGTTCAATGA
AA sequence Show only first row Show all	>Potri.011G157600.1 pacid=42782080 polypeptide=Potri.011G157600.1.p locus=Potri.011G157600 ID=Potri.011G157600.1.v4.1 annot-version=v4.1 MASPRFLLLLFTTLSLTVSSAISGSVVEDLANLQPPSDFNTTIMKNCQHNPSLRYCNSSSMDLKEIFKFTIVASHLCNESKNPNCVHSFDNIDLRNRPKM APLYLSYSFFWKYCPLTILSIDLSNISLKGSFPKEVICCDQIQALDLSLNGLTGEFPIESFAPLTNLTFLNLSYNYFSESKISDSQFFKRFNSSSFIHSG ILPSDRNYTIKAIFLLVGFPICVILMAVCFGWLCFQRPDYLPRMFQRKHKFTPSMLRAATNGFSRKNQMVRSEGVEIYKGTLRDSTQVRIEIYRGCISRE KRKEFVEECKVLVELCHKNLVQVLGWCSNRNQRAIVTEWTDGETIEMWLSGSAPPWKQRLKMLIGVVDGMRYLQEHWPEVVYDLRINSVLLSDNHEPLLS RFQVGDQYSNNKKIHKFGIFLLEIITNRRSQEFERGEAGLIEYVRDNYPKNLHKVIDARMKLPENMFDQAKHGIELGLMCTDQSISKHPSLNQISHMINK VYESCLELAPQNHKRSHGDGGKGHKHVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20790			Leucine-rich repeat protein ki...		Potri.011G157600 [exp]	0	1
AT5G63390			O-fucosyltransferase family pr...		Potri.012G095166 [exp]	24.00	0.7228
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Potri.003G033000 [exp]	37.14	0.6746
AT3G27785	MYB	PGA37, ATMYB118	PLANT GROWTH ACTIVATOR 37, myb...		Potri.001G347200 [exp]	161.36	0.7371
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Potri.006G169800 [exp]	208.89	0.7182
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.010G176000 [exp]	219.63	0.6493	IDH1.2
AT5G06270			unknown protein		Potri.016G073400 [exp]	235.45	0.6745
AT5G38260			Protein kinase superfamily pro...		Potri.004G096675 [exp]	257.69	0.6729

Compare expression of checked genes

Potri.011G157600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.