Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34820 126 / 2e-34 bHLH bHLH053 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G30670 110 / 1e-28 bHLH bHLH052 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G50330 45 / 3e-05 bHLH HEC2, bHLH037 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00120 44 / 5e-05 bHLH IND1, GT140, bHLH040, IND, EDA33 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G09750 44 / 6e-05 bHLH HEC3, bHLH043 HECATE 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G21330 44 / 0.0001 bHLH bHLH087 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT5G67060 42 / 0.0003 bHLH HEC1, bHLH088 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G461000 [exp] 438 / 3e-156 AT1G30670 122 / 5e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G060900 [exp] 47 / 7e-06 AT4G00120 151 / 7e-46 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G044600 [exp] 46 / 9e-06 AT5G67060 150 / 7e-45 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G108000 [exp] 45 / 3e-05 AT4G00120 150 / 3e-45 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G138900 [exp] 44 / 4e-05 AT3G50330 134 / 2e-38 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G191800 [exp] 44 / 6e-05 AT3G21330 230 / 2e-71 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G125000 [exp] 43 / 0.0001 AT5G67060 137 / 2e-39 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.014G027300 [exp] 42 / 0.0002 AT5G67060 141 / 6e-41 HECATE 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.006G102600 [exp] 41 / 0.0002 AT5G01310 112 / 4e-29 APRATAXIN-like (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038432 [exp] 123 / 3e-33 AT1G30670 108 / 4e-28 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005451 [exp] 102 / 8e-26 AT1G30670 115 / 4e-31 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033488 [exp] 43 / 0.0001 AT4G00120 143 / 4e-43 INDEHISCENT, EMBRYO SAC DEVELOPMENT ARREST 33, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10005710 [exp] 42 / 0.0002 AT3G50330 160 / 1e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10012670 [exp] 42 / 0.0003 AT3G50330 158 / 3e-48 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10042647 [exp] 42 / 0.0003 AT3G50330 163 / 1e-49 HECATE 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G157700.1 pacid=42780448 polypeptide=Potri.011G157700.1.p locus=Potri.011G157700 ID=Potri.011G157700.1.v4.1 annot-version=v4.1 ATGGCTCTAAGCTTTTGTTCAAACTTGGGCTCATCGCTTCAGCATCACAACCTTCAAGAGTTGACAGAATATCCACAAGGCGACATAGAGATAGGAAATG ATCAGCTCTTTGCTTGCAATGACAACATGATGTTTTCAGATGCTTTCATCAACCCTTTGTATGAGGTTGAGGAGCAGCTAGTTTACTCGGATAGCTACAC CGATCTCCTCCCATATTTCTCTTCTCCTTCAGATAACATAATCTCTCTCTCCCCCGAAATCTTTCCTCTCCAAGATTTTGAGTCCTACCACTACCCGAAA CGCCCAAAAACCTACACAGATCATTTCAACTCAACTTTTGAACCGAATTTCTTCGAAGGATATGCTCCGAATCCCAATCCAGGACTCCCAGAATTATTTC CAGAAATCCCAACCCCGGAACCTAAGTTTCAGGTTCCAATAACGTTCAATGTTGGGAGGACTGATCAGAGTGTGATGAATTCAAAGAAACCAAGTACTGG AGTGAGCTTGTCTACACAGAGCATCGCTGCGCGTGAGAGGAGAAGGAAGATAACCGAGAAGACACGGGAGCTTGGAAAGTTTATTCCTGGTGGGCATAAG ATGAACACTGCTGAGATGTTCCAAGCTGCTTCCAAGTATGTCAAGTTCTTGCAGGCTCAAATTGGAATTCTTGAACTCATGGGGTCAACTCAGGAAAACA AAGGGCCAATGCACACACAGGAACTTCAAACTCTCCTTGTAACATCTCCAGCAATTCAAGAGAAGTTGTACTCAGAAGAGAAATGCTTGGTTCCAAGAGA TTTTGTCCAAACCATTGCTAACGATTGCCAAATCCAATCAAAACCCTTGGTCATTGAGGAGATTGATCAGTTGTTGGGGGGTCAATTGCTTGGATAG
AA sequence Show only first row Show all	>Potri.011G157700.1 pacid=42780448 polypeptide=Potri.011G157700.1.p locus=Potri.011G157700 ID=Potri.011G157700.1.v4.1 annot-version=v4.1 MALSFCSNLGSSLQHHNLQELTEYPQGDIEIGNDQLFACNDNMMFSDAFINPLYEVEEQLVYSDSYTDLLPYFSSPSDNIISLSPEIFPLQDFESYHYPK RPKTYTDHFNSTFEPNFFEGYAPNPNPGLPELFPEIPTPEPKFQVPITFNVGRTDQSVMNSKKPSTGVSLSTQSIAARERRRKITEKTRELGKFIPGGHK MNTAEMFQAASKYVKFLQAQIGILELMGSTQENKGPMHTQELQTLLVTSPAIQEKLYSEEKCLVPRDFVQTIANDCQIQSKPLVIEEIDQLLGGQLLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34820	bHLH	bHLH053	basic helix-loop-helix (bHLH) ...		Potri.011G157700 [exp]	0	1
AT2G44350		CSY4, ATCS	CITRATE SYNTHASE 4, Citrate sy...		Potri.009G023900 [exp]	21.49	0.6504	ATCS.1
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.001G321500 [exp]	27.33	0.7175

Compare expression of checked genes

Potri.011G157700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.