Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34575 649 / 0 FAD-binding Berberine family protein (.1) AT1G30710 637 / 0 FAD-binding Berberine family protein (.1) AT1G30700 574 / 0 FAD-binding Berberine family protein (.1) AT4G20840 570 / 0 FAD-binding Berberine family protein (.1) AT1G30720 561 / 0 FAD-binding Berberine family protein (.1) AT1G01980 560 / 0 ATSEC1A FAD-binding Berberine family protein (.1) AT4G20800 556 / 0 FAD-binding Berberine family protein (.1) AT1G26420 555 / 0 FAD-binding Berberine family protein (.1) AT1G30730 553 / 0 FAD-binding Berberine family protein (.1) AT1G11770 551 / 0 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G459500 [exp] 672 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G155900 [exp] 672 / 0 AT4G20800 617 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 666 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 658 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 656 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 654 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G156000 [exp] 647 / 0 AT4G20800 597 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 632 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158500 [exp] 609 / 0 AT1G01980 671 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038439 [exp] 588 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 571 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 552 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 551 / 0 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 543 / 0 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 516 / 4e-180 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10023361 [exp] 513 / 6e-178 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10032943 [exp] 507 / 5e-176 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10023365 [exp] 504 / 1e-174 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038437 [exp] 497 / 3e-172 AT1G26380 484 / 2e-167 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G158400.1 pacid=42781636 polypeptide=Potri.011G158400.1.p locus=Potri.011G158400 ID=Potri.011G158400.1.v4.1 annot-version=v4.1 ATGAAGAGTCCTTTTGTGTTCTTTTCAGTTCTTCTGATTTCAGTTTCATTGCCAAACTCGATTGCACTTCCAGACAACTTTCTGCAATGTCTTACAGAAA ATTCTCAGCCTACAAATCCCATTTCTGATGCTATCCATACTCCTGACAATCCTTCATTCACAACAGTTTTGCAGTCTTATGCCAGAAACCTAAGGTTCCT GACGCTTTCAACACCAAAACCCCTTGCTATCATAGCCGCGAAGCACGAATCCCATGTCCAAGCAACCATTATTTGTTCTAAAAAACTTGGCTTGCAGATC AGAATTCGGAGTGGCGGTCACGATTATGATGGACTTTCGTATGTTTCTGATGTCGCTTTTATTATTCTTGATATGTTCAATCTTCGATCGATCAATATTG ATATTGAAGATGAAAGTGCTTGGGTTCAGGCTGGAGCGACTCTTGGCGAAGTTTATTATAGAATTGCAGAGAAAAGCAATGTCCATGGATTTCCTGCAGG TGTCTGTCCTACACTAGGCGTTGGGGGACACTTTTCAGGTGGTGGATATGGCAATATGATGAGAAAATATGGCCTGTCAGTTGACAATATAGTTGATGCA CAAATAATTGATGTCAGGGGAAGGATTCTTGATAGAAAATCTATGGGAGAAGATCTCTTTTGGGCCATTAGAGGAGGAGGTGCAGCAAGCTTTGGAGTCA TCCTTTCCTGGAAAATAAAATTGGTTCCAGTCCCGGAAATTGTCACAGTTTTTAGTGTTGACAGAACTCTGGAGGAGGGTGTTAGTGACCTCGCTTGGAA GTGGCAACAGATTGCAGCTGATAAACTAGATAATGATCTCTTCATAAGATTGATGCTACAGCCTGTAAATGGAACTCAAGAAGGGAAGAAAACTATACAG GCATCCTTCGTTGCCATGTTTCTTGGCCGAGCAGAAAGACTCCTTTCGGTGATGAATGAAAGCTTCCCTGAATTAGGCTTACAGGCGAAGGACTGCGCTG AAATGAGATGGATCGAATCTGTCCTGTCTTGGGTCGGCATGCCTAAAGGAACTCCCATTGAAGTTTTACTTGACAGGATTCCAAAGGGTGTGAGCTATCT GAAACGGAAATCAGACTATGTTAAAGAACCTATTTCAAAGGAAGGTTTGGAATCCATTTGGAAGGTTATGACTGAGGTTGGAGAAGTGGCAATGCTCTGG AATCCTTATGGTGGAAAAATGAGTGAGATTTCGGAGACGGAAACTGCATTCCCGCATAGAGCTGGAAACATATTCAAGATCCAATATTCTGTGAATTGGA AGCAAGAAGGAATTGACACCACCAACCATTATGTCAATTTGACAAGAACTCTCTTTGAAGCCATGACTCCTTATGTCTCAAAGAACCCGAGGGAAGCATT CCTCAACTACCGTGATATCGACATTGGTAGCATTGGCAGCCATGGAAATGGGACATTCCAGGAAGCAAGTGTTTATGGGCATAAGTACTTCAAGGATAAC TTTGACAGATTAGTGCAAATTAAGACAAGGGTTGATCCTGATAACTTTTTCGGGTATGAACAAAGTATTCCAACTCAATCATCATCTTACAGTAAGATCC TATGA
AA sequence Show only first row Show all	>Potri.011G158400.1 pacid=42781636 polypeptide=Potri.011G158400.1.p locus=Potri.011G158400 ID=Potri.011G158400.1.v4.1 annot-version=v4.1 MKSPFVFFSVLLISVSLPNSIALPDNFLQCLTENSQPTNPISDAIHTPDNPSFTTVLQSYARNLRFLTLSTPKPLAIIAAKHESHVQATIICSKKLGLQI RIRSGGHDYDGLSYVSDVAFIILDMFNLRSINIDIEDESAWVQAGATLGEVYYRIAEKSNVHGFPAGVCPTLGVGGHFSGGGYGNMMRKYGLSVDNIVDA QIIDVRGRILDRKSMGEDLFWAIRGGGAASFGVILSWKIKLVPVPEIVTVFSVDRTLEEGVSDLAWKWQQIAADKLDNDLFIRLMLQPVNGTQEGKKTIQ ASFVAMFLGRAERLLSVMNESFPELGLQAKDCAEMRWIESVLSWVGMPKGTPIEVLLDRIPKGVSYLKRKSDYVKEPISKEGLESIWKVMTEVGEVAMLW NPYGGKMSEISETETAFPHRAGNIFKIQYSVNWKQEGIDTTNHYVNLTRTLFEAMTPYVSKNPREAFLNYRDIDIGSIGSHGNGTFQEASVYGHKYFKDN FDRLVQIKTRVDPDNFFGYEQSIPTQSSSYSKIL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G34575			FAD-binding Berberine family p...		Potri.011G158400 [exp]	0	1
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	1.00	0.9468
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	2.23	0.8666
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.006G026500 [exp]	2.44	0.8936
AT5G03260		LAC11	laccase 11 (.1)		Potri.007G023300 [exp]	3.46	0.8006
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159801 [exp]	5.29	0.8748
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Potri.004G207600 [exp]	6.70	0.7783	Pt-XCP1.1
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Potri.002G151900 [exp]	7.93	0.8463
AT3G14360			alpha/beta-Hydrolases superfam...		Potri.003G073800 [exp]	8.24	0.7698
AT3G25597			unknown protein		Potri.008G111500 [exp]	8.48	0.8389
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.014G000800 [exp]	8.83	0.7915

Compare expression of checked genes

Potri.011G158400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.