Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G01980 670 / 0 ATSEC1A FAD-binding Berberine family protein (.1) AT1G11770 667 / 0 FAD-binding Berberine family protein (.1) AT4G20840 667 / 0 FAD-binding Berberine family protein (.1) AT4G20830 645 / 0 FAD-binding Berberine family protein (.1.2) AT1G30740 579 / 0 FAD-binding Berberine family protein (.1) AT1G30700 578 / 0 FAD-binding Berberine family protein (.1) AT1G30710 526 / 0 FAD-binding Berberine family protein (.1) AT1G34575 518 / 1e-180 FAD-binding Berberine family protein (.1) AT1G26420 506 / 9e-176 FAD-binding Berberine family protein (.1) AT1G26390 506 / 1e-175 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G462600 [exp] 898 / 0 AT1G01980 658 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462200 [exp] 622 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158300 [exp] 614 / 0 AT1G30700 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G470100 [exp] 611 / 0 AT1G30700 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158400 [exp] 609 / 0 AT1G34575 649 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462400 [exp] 587 / 0 AT1G30700 647 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459500 [exp] 586 / 0 AT4G20800 559 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459200 [exp] 563 / 0 AT4G20800 606 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G459100 [exp] 563 / 0 AT4G20800 623 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023365 [exp] 575 / 0 AT1G11770 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 550 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 547 / 0 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 542 / 0 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023366 [exp] 535 / 0 AT1G11770 490 / 2e-171 FAD-binding Berberine family protein (.1) Lus10009009 [exp] 516 / 2e-179 AT1G30700 534 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 502 / 4e-174 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 488 / 8e-169 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 478 / 7e-165 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10021289 [exp] 475 / 9e-164 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G158500.1 pacid=42782226 polypeptide=Potri.011G158500.1.p locus=Potri.011G158500 ID=Potri.011G158500.1.v4.1 annot-version=v4.1 ATGGCAGAACCAACCCTTTTAGCCTTTCTTTTACTTCTTCTTGTCTTCAATGTACCGTCCGGTTCTTTCTCTGCCACAACTAATGATGAATCAGTGTATG AATCTTTCCTTCAGTGCCTAGAAAAAAATACAAATCCCCAAGACAAAATCTCAAACCTTGTTTACTCACAATCCAACGCAGCTTACACTTCAGTTTTAAG AGCTTACATAAGAAACGCACGTTACAATACTTCGGCAACACCGAAACCACTTGTCATTGTAACTCCAACTGAAATATCCCATGTTCAAGCCACAGTTATT TGCACCAAAAAAGTTGGTTACCAGCTCAAAATCAGAAGTGGTGGACATGATTATGATGGGATTTCTTACATTTCTGACACACCCTTTTTCATTCTTGACA TGTTTAACCTAAGGTCCATTGAAGTGGATATCAAGGATGAGTCTGCTTGTGTTCAGGCAGGTGCTACTCTTGGTGAACTCTACTATAAAATCTGGGAAAG CAGCAAGGGTTATGGTTTTCCTGCTGGGGTTTGTCCTACAGTTGGTGTCGGTGGGCATTTAAGTGGTGGGGGTTATGGCAATATGTTGAGGAAATATGGG TTGTCTGTTGATAATGTGTTGGATGCACAGATTGTTGATGTTAATGGGAAACTTCTTGATAGGAAAGCAATGGGGGAGGATCTTTTTTGGGCGATTTGTG GAGGAGGAGGTGGAAGTTTTGGGGTTATAATTTCTTACAAGATCAAGCTTGTTCCGGTTCCTAAGACAGTTACTGTTTTCAGAGTTGAAAGAACACTTGA TCAGAATGCTACTGATGTTGTTTACAAGTGGCAATTTGTTGCTCCTACAATAAGCAATGATCTTTTCATGAGGATGCTTTTGCAGCCTGTGACAAGGAAA GGTAAACAGACTATTAGAGCATCAATTGTGACATTGTATTTAGGGGATTCTGATAGTCTCGTGGCTTTACTGGGAAAAGAATTTCCTGAGTTGGGATTGA AGAAGGAGAACTGTAACGAAACAAGCTGGATTCAGTCTGTGTTATGGTGGGCTAATTATGATCTTGGAACATCACCAGATGTTCTTCTTGACAGGAATCC TAATGATGCCAATTTCTTGAAGAGGAAATCAGATTATGTTCAGAAACCAATTCCAAAAGATGGGTTAGAATGGTTGTGGAAAAAGATGATTGACGTGGGC AAGACTGGATTGGTTTTCAATCCTTATGGTGGTAGAATGAGTGAAATTCCTGCCTCGGCAACGCCATTCCCTCACAGGGCAGGCAATTTGTATAAGATCC AGTATTCAATGAACTGGCAAGAAGCTGGAAAGGAAGCAGACAAGAAATTCATGACTCAAATAAGGAGGCTTCACAGTTACATGACCTCATTTGTTTCCAA GAATCCAAGGAGTGCATTTTTGAACTACAGGGATCTTGACATTGGTGTTACGGTGCCTAATAAAGATAGTTTTGAGCAGGGTAGTGTTTATGGTTACAAG TATTTCAATGACAATTTTGATAGGTTGGTGAAGGTAAAGACTGCAGTGGATCCAGAAAATTTCTTCAGGAATGAACAGAGCATCCCTACTCTACCAAGAA AGGCATAG
AA sequence Show only first row Show all	>Potri.011G158500.1 pacid=42782226 polypeptide=Potri.011G158500.1.p locus=Potri.011G158500 ID=Potri.011G158500.1.v4.1 annot-version=v4.1 MAEPTLLAFLLLLLVFNVPSGSFSATTNDESVYESFLQCLEKNTNPQDKISNLVYSQSNAAYTSVLRAYIRNARYNTSATPKPLVIVTPTEISHVQATVI CTKKVGYQLKIRSGGHDYDGISYISDTPFFILDMFNLRSIEVDIKDESACVQAGATLGELYYKIWESSKGYGFPAGVCPTVGVGGHLSGGGYGNMLRKYG LSVDNVLDAQIVDVNGKLLDRKAMGEDLFWAICGGGGGSFGVIISYKIKLVPVPKTVTVFRVERTLDQNATDVVYKWQFVAPTISNDLFMRMLLQPVTRK GKQTIRASIVTLYLGDSDSLVALLGKEFPELGLKKENCNETSWIQSVLWWANYDLGTSPDVLLDRNPNDANFLKRKSDYVQKPIPKDGLEWLWKKMIDVG KTGLVFNPYGGRMSEIPASATPFPHRAGNLYKIQYSMNWQEAGKEADKKFMTQIRRLHSYMTSFVSKNPRSAFLNYRDLDIGVTVPNKDSFEQGSVYGYK YFNDNFDRLVKVKTAVDPENFFRNEQSIPTLPRKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G01980		ATSEC1A	FAD-binding Berberine family p...		Potri.011G158500 [exp]	0	1
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.018G141700 [exp]	1.00	0.9197
					Potri.003G087550 [exp]	2.82	0.9016
AT1G35520	ARF	ARF15	auxin response factor 15 (.1)		Potri.012G012950 [exp]	3.87	0.9061
AT3G01980			NAD(P)-binding Rossmann-fold s...		Potri.001G327800 [exp]	4.12	0.8603
AT3G06780			glycine-rich protein (.1)		Potri.010G006600 [exp]	4.24	0.8873
AT4G01500	B3	NGA4	NGATHA4, AP2/B3-like transcrip...		Potri.012G013700 [exp]	5.09	0.9183
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.008G010600 [exp]	7.48	0.8891
AT2G46620			P-loop containing nucleoside t...		Potri.002G175600 [exp]	8.48	0.8878
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.007G089000 [exp]	8.66	0.8916	Pt-MIPS.2
AT5G24520		ATTTG1, URM23, ...	UNARMED 23, TRANSPARENT TESTA ...		Potri.015G002600 [exp]	10.95	0.8279

Compare expression of checked genes

Potri.011G158500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.