Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 394 / 2e-134 FAD-binding Berberine family protein (.1) AT2G34790 374 / 1e-126 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44390 370 / 5e-125 FAD-binding Berberine family protein (.1) AT5G44400 362 / 4e-122 FAD-binding Berberine family protein (.1) AT5G44380 347 / 5e-116 FAD-binding Berberine family protein (.1) AT4G20820 327 / 2e-108 FAD-binding Berberine family protein (.1) AT1G30700 327 / 3e-108 FAD-binding Berberine family protein (.1) AT5G44440 302 / 2e-98 FAD-binding Berberine family protein (.1) AT4G20840 299 / 2e-97 FAD-binding Berberine family protein (.1) AT1G30710 292 / 8e-95 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G158901 [exp] 581 / 0 AT1G30760 595 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 501 / 2e-176 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 499 / 7e-176 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 498 / 3e-175 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 496 / 3e-174 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 495 / 3e-174 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 493 / 3e-173 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160700 [exp] 491 / 1e-172 AT1G30760 627 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463300 [exp] 483 / 1e-169 AT1G30760 622 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023361 [exp] 388 / 1e-131 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 335 / 2e-111 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 331 / 7e-110 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023375 [exp] 314 / 4e-103 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 309 / 2e-101 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 307 / 1e-100 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 301 / 3e-98 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10021289 [exp] 295 / 6e-96 AT1G26380 486 / 4e-168 FAD-binding Berberine family protein (.1) Lus10023374 [exp] 293 / 3e-95 AT1G26380 500 / 5e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 291 / 4e-94 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G158800.2 pacid=42781613 polypeptide=Potri.011G158800.2.p locus=Potri.011G158800 ID=Potri.011G158800.2.v4.1 annot-version=v4.1 ATGGCCTGTTCTGGCTCTTCCATTCTGTTATTTTTTGTTTTTCTATTTTTACATCCTTCATTGCTACTCTCACTTCCAGTTCAGGATAGCTTTCTGCAGT GTCTCTCAAAAAATTCTGAACTCTCCTTTCCCTTTTCCACCATCGTGTACACTCCAAAAAACTCTTCATACACTACTATTCTGCAATCTTCTGCTCAAAA CCCCAGATTCACAAGGCCTTCGTTACCAAAACCAGAGTTTATAGTCACTCCATTACAGGAATCTCACATCCAAGCTGCTGTTATTTGCTCAAAGCAGCTT GGAATTCATCTTAGAGTCCTTAGTGGAGGCCATGACTATGAGGGACTCTCTTATGTATCTGAAATTGAAAAACCATTCATTGTTGTAAACCTTGCCAAAC TTCGATCCATTAGCGTCGATATCGATGATAACAGCGCATGGGTTCAAGCGGGGGCTACAAATGGTGAACTCTACTATAGAATTGCTGAGAAAAGCAAAAC TCGTGGCTTCCCGGCTGGTCTTGCCACCACTCTTGGTATTGGTGGGCACATCACAGGTGGTGCTTATGGCTCTATGTTGAGGAAATATGGCCTTGCAGTA GACAATGTGATCGACGCTCGCATAGTTGATGTTCATGGAAGGGTTCTTGACAGGAAAGCCATGGGGAAAGATCTTTTCTGGGCAATCAGAGGAGGTGGAG GAGGCAGCTTTGGAATCAATTCTGCCTGGAAAGTAAAATTGGTTCCAGTTCCATCAACTGTGACAGTTTTTCAGATTACTAAGACCCTGGAACAAGGTGC TATTAAAATCCTTAATAGATGGCAACAAGTTGCTGATAAACTTGACGAGGATCTCTTCATCAGAGTCTACTTACAATTGGCTGGTGCTGGTAACGGAGGA AAAAAAACTGTATCAACCACTTACATTTCCTTGTTTCTTGGTGATGCCAGAAGACTCCTCCAAGTAATGCAAGACAGCTTCCCTGAATTGGGTTTGACAA GACAGGATTGTATTGAAACAAGCTGGATCAACTCTGTGCTGCATTTGGCTGGTTACTCCAACGACACAGCACCATAG
AA sequence Show only first row Show all	>Potri.011G158800.2 pacid=42781613 polypeptide=Potri.011G158800.2.p locus=Potri.011G158800 ID=Potri.011G158800.2.v4.1 annot-version=v4.1 MACSGSSILLFFVFLFLHPSLLLSLPVQDSFLQCLSKNSELSFPFSTIVYTPKNSSYTTILQSSAQNPRFTRPSLPKPEFIVTPLQESHIQAAVICSKQL GIHLRVLSGGHDYEGLSYVSEIEKPFIVVNLAKLRSISVDIDDNSAWVQAGATNGELYYRIAEKSKTRGFPAGLATTLGIGGHITGGAYGSMLRKYGLAV DNVIDARIVDVHGRVLDRKAMGKDLFWAIRGGGGGSFGINSAWKVKLVPVPSTVTVFQITKTLEQGAIKILNRWQQVADKLDEDLFIRVYLQLAGAGNGG KKTVSTTYISLFLGDARRLLQVMQDSFPELGLTRQDCIETSWINSVLHLAGYSNDTAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30760			FAD-binding Berberine family p...		Potri.011G158800 [exp]	0	1
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	3.31	0.9101
AT5G14340	MYB	AtMYB40	myb domain protein 40 (.1)		Potri.008G180800 [exp]	5.00	0.9027
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	6.16	0.9092
AT4G22820			A20/AN1-like zinc finger famil...		Potri.012G130000 [exp]	8.48	0.8756
AT4G02340			alpha/beta-Hydrolases superfam...		Potri.014G127101 [exp]	8.83	0.8513
AT1G65730		YSL7	YELLOW STRIPE like 7 (.1)		Potri.005G093800 [exp]	13.67	0.8693
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	14.89	0.8999
AT3G54880			unknown protein		Potri.010G227800 [exp]	14.96	0.8943
AT1G30760			FAD-binding Berberine family p...		Potri.011G158901 [exp]	17.74	0.8003
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	20.97	0.8845

Compare expression of checked genes

Potri.011G158800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.