Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44400 615 / 0 FAD-binding Berberine family protein (.1) AT2G34790 613 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30760 606 / 0 FAD-binding Berberine family protein (.1) AT5G44390 584 / 0 FAD-binding Berberine family protein (.1) AT5G44380 566 / 0 FAD-binding Berberine family protein (.1) AT5G44360 460 / 8e-158 FAD-binding Berberine family protein (.1) AT4G20820 457 / 2e-156 FAD-binding Berberine family protein (.1) AT4G20860 456 / 4e-156 FAD-binding Berberine family protein (.1) AT1G30700 436 / 1e-148 FAD-binding Berberine family protein (.1) AT5G44440 424 / 2e-143 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G159100 [exp] 956 / 0 AT5G44400 614 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160400 [exp] 955 / 0 AT5G44400 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G463400 [exp] 840 / 0 AT1G30760 661 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158700 [exp] 739 / 0 AT1G30760 664 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G462800 [exp] 738 / 0 AT1G30760 659 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161300 [exp] 721 / 0 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 714 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 711 / 0 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 710 / 0 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023361 [exp] 635 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 588 / 0 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 584 / 0 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 470 / 8e-162 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 454 / 2e-155 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 446 / 2e-152 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10012641 [exp] 437 / 2e-148 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 436 / 5e-148 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 432 / 6e-147 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 432 / 1e-146 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G159200.1 pacid=42780766 polypeptide=Potri.011G159200.1.p locus=Potri.011G159200 ID=Potri.011G159200.1.v4.1 annot-version=v4.1 ATGGTGTTTCCAAGTGCTTCCATTCTTTCAATACTTGTAGTCCTACTCCTATCTCCATTTGTATTTTCATACCCAATTCAGGATACGTTTCTACAATGTC TCTCATCAACTTCAGAATCCTCCTTTCCTTTCTCCACTGCCTTGTACACTCCAATTAATAACTCTTCATTCACCACAGTTTTACTTTCTACTGCTCAAAA CCTGAGGTATATATTGCCTTCAGTGCCAAAGCCAGAGTTTATCTTCACACCATTCAATGAATCCGACATTCAAGCAGCTGTTGTTTGCTGCAAACAGCTT GGAATTCACTTTAGAGTTCGCAGTGGAGGCCATGATTACGAGGCTGTCTCTTATGTCTCTGCAATTGAATCCCCTTTCATTATTATAGACCTTGCCAAGC TACGGTCTGTTGACGTTGACATCGAAGATAATAGCGCTTGGGTTCAGGCAGGCGCCACAAATGGTGAACTTTACTACAGGATTGCTGAAAAAAGTAAAAC GCATGGTTTCCCTGCTGGCCTTTGCACCAGTTTAGGCATGGGTGGGCTCATTACAGGTGGTGCTTATGGTGCTATGATGAGGAAATACGGCCTCGGTGCT GACAATGTCATCGATGCTCGCATAGTCGATGCTCAGGGCAGGATTCTTGATAGAAAAGCCATGGGAGAAGAACTTTTTTGGGCAATCAGAGGAGGAGGAG GAGGAAGCTTTGGTATTATTACTGCCTGGAAAGTAAAATTGGTCCCTGTTCCAGAAACTGTAACAGTCTTTACAGTTACTAAGACCTTGGAACAAGGCGC CACTAAGCTCCTCTATAGATGGCAGCAAGTTGCTGACAAACTCGACGAAGATCTCTTCATTAGAGTTAGCATTCAAACAGCCGGTACCACAGGCAACAGA ACCATCACAACTTCCTATAATGCCGTGTTTCTTGGTGATGCCAAGAGACTCCTCAGGGTAATGGAATCTAGCTTTCCAGAATTGGGCCTGACACAGAAGG ATTGCATCGAAACTACCTGGCTCGAATCTGTGCTATACACTGGCAGCTATCCGAGCAATACACCTCCCGAAGCTTTACTTCAAGCAAATAACGTATTGAA GAGCTACTTCAAAGCCAAGTCAGATTTTGTCCAAGAACCTATCCCTGAATCTGCACTGAAAGGTATTTGGAAAAGGCTTTTCAAAGAAGAAGGCGGTTTC ATGATATGGAATCCTTTTGGTGGAATGATGAGCAAAATCTCTGAGTTTGAGACTCCTTTCCCCCATAGAAAGGGTGATCTATTCATGATCCAGTATGTAA CTGGCTGGCAGGATGCTTCAGGGGATGTTGGAAAGCACGTAAAGTGGATCAGGGAGCTTTACAAGTACATGGCACCTTATGTTTCCAAGAATCCAAGGGA AGCATATGTGAATTACAGGGATCTTGATCTGGGCATCAACAGGAACACTAACACTAGCTTTATTAAGGCAAGTGTTTGGGGTGCTAAATACTTCAAGGGT AACTTCTACAGGTTGGCATTAGTGAAGAGCAAAGTTGATCCAGACAACATTTTCAGGCATGAACAAAGCATCCCACCTCTTCCACTTCACATGAGATAG
AA sequence Show only first row Show all	>Potri.011G159200.1 pacid=42780766 polypeptide=Potri.011G159200.1.p locus=Potri.011G159200 ID=Potri.011G159200.1.v4.1 annot-version=v4.1 MVFPSASILSILVVLLLSPFVFSYPIQDTFLQCLSSTSESSFPFSTALYTPINNSSFTTVLLSTAQNLRYILPSVPKPEFIFTPFNESDIQAAVVCCKQL GIHFRVRSGGHDYEAVSYVSAIESPFIIIDLAKLRSVDVDIEDNSAWVQAGATNGELYYRIAEKSKTHGFPAGLCTSLGMGGLITGGAYGAMMRKYGLGA DNVIDARIVDAQGRILDRKAMGEELFWAIRGGGGGSFGIITAWKVKLVPVPETVTVFTVTKTLEQGATKLLYRWQQVADKLDEDLFIRVSIQTAGTTGNR TITTSYNAVFLGDAKRLLRVMESSFPELGLTQKDCIETTWLESVLYTGSYPSNTPPEALLQANNVLKSYFKAKSDFVQEPIPESALKGIWKRLFKEEGGF MIWNPFGGMMSKISEFETPFPHRKGDLFMIQYVTGWQDASGDVGKHVKWIRELYKYMAPYVSKNPREAYVNYRDLDLGINRNTNTSFIKASVWGAKYFKG NFYRLALVKSKVDPDNIFRHEQSIPPLPLHMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44400			FAD-binding Berberine family p...		Potri.011G159200 [exp]	0	1
AT5G44400			FAD-binding Berberine family p...		Potri.011G159100 [exp]	7.21	0.9959
AT4G20820			FAD-binding Berberine family p...		Potri.001G462100 [exp]	10.19	0.9957
AT5G50915	bHLH	bHLH137	basic helix-loop-helix (bHLH) ...		Potri.003G164500 [exp]	12.24	0.9879
AT5G44400			FAD-binding Berberine family p...		Potri.011G160400 [exp]	12.48	0.9951
AT5G52400		CYP715A1	"cytochrome P450, family 715, ...		Potri.015G145100 [exp]	14.00	0.9928
AT5G42930			alpha/beta-Hydrolases superfam...		Potri.014G027400 [exp]	14.96	0.9876
AT5G05600			2-oxoglutarate (2OG) and Fe(II...		Potri.006G101200 [exp]	15.23	0.9921
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.008G118400 [exp]	16.43	0.9917
AT3G11840		PUB24	plant U-box 24 (.1)		Potri.009G016100 [exp]	17.60	0.9912
AT1G75250	MYB	RSM3, ATRL6	RADIALIS-LIKE SANT/MYB 3, RAD-...		Potri.007G025100 [exp]	18.76	0.9760

Compare expression of checked genes

Potri.011G159200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.