Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34790 615 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30760 614 / 0 FAD-binding Berberine family protein (.1) AT5G44400 611 / 0 FAD-binding Berberine family protein (.1) AT5G44390 581 / 0 FAD-binding Berberine family protein (.1) AT5G44380 565 / 0 FAD-binding Berberine family protein (.1) AT1G30700 482 / 2e-166 FAD-binding Berberine family protein (.1) AT5G44360 468 / 1e-160 FAD-binding Berberine family protein (.1) AT4G20820 467 / 2e-160 FAD-binding Berberine family protein (.1) AT1G26380 456 / 3e-156 FAD-binding Berberine family protein (.1) AT1G26410 450 / 2e-153 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161300 [exp] 937 / 0 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 909 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 899 / 0 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 899 / 0 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160700 [exp] 894 / 0 AT1G30760 627 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 869 / 0 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 847 / 0 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161600 [exp] 844 / 0 AT5G44400 631 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 785 / 0 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023361 [exp] 659 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 599 / 0 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 588 / 0 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 488 / 2e-168 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 481 / 7e-166 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 473 / 7e-163 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 465 / 2e-159 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 458 / 5e-157 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 454 / 3e-155 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 450 / 4e-154 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G161400.1 pacid=42780405 polypeptide=Potri.011G161400.1.p locus=Potri.011G161400 ID=Potri.011G161400.1.v4.1 annot-version=v4.1 ATGGTGCCTTCAAGATCCTCCATACTTTCAATACTTGTGGTCCTACTCCTATCTCCATTTATAGTTTCACTTCCAATTCAGGATAGGTTTCTAAAATGTC TCTCAAAATATTCAGATACATCCTTTCCTTTTTCCACTGTCTTGTATACTCCACAAAACTCTTCTTTCACTACTGTCTTACAATCTTCTGCTCAAAACCT CAGGTTCACCTCGCCTTCAGTACCGAAACCTGAGTTTATCTTCACTCCTTTACAAGAATCTCACATCCAAGCTGTTGTTATTTGCTCTAAGCAGCTTGGA ATTCACCTTAGAGTCCGTAGCGGAGGCCATGATTATGAGGGACTCTCTTATGTTTCAGAAATCGAGAAACCTTTCGTTGTTGTAGACCTTGCCAAGCTCC GGTCCATCAGCGTTGATATTGAGCATAATAGCGCGTGGGTTCAGGTGGGTGTCACGAATGGTGAACTTTACTACAGAATTTCTGAGAAAAGCAAAACCCA TGGCTTCCCAGCTGGCACTTGCACAAGTTTAGGTATGGGCGGGCACATTTCAGGAGGTGCATATGGTGCCATGTTGCGAAAATATGGCCTTGGAGCGGAC AACGTCGTTGATGCACATCTAATTGATGTTCATGGTAGACTTCTCAACCGAAAACTCATGGGCGAAGATCTTTTCTGGGCCATCAGAGGAGGTGCAGGGG GGAGCTTCGGAATTGTCACCGCCTGGAAGTTAAAATTGGTTCCCGTACCATCAACCGTGACAGTATTTACCGTTACCAAGACCTTAGAACAAGGTGCAAC TAAGATCCTTTATAGATGGCAAGAAATTGCTGATAAACTAGACGAGGATCTTTTCATCAAAGTACTCATTCAGACAGCTAACGTCACCTCCCAAGGTAAA AGAACTATTGCTACTTCTTACAATTCCTTGTTTCTTGGTGATGCCAGGAGGCTTCTTCAGATAATGCAGCGCAGCTTTCCTGAATTGGGTTTGACACGAA AAGATTGTATCGAAACAAACTGGATCAATTCCACTGTATTTATGGCTTTGCTCCAAAATAATACTCCTCCTGAAGTTTTCCTTCAAAGAAAAGACCCGAA CAGGCGGTATTTCAAAGCCAAATCGGACTATGCCAAAAAACCCGTTTCTGAAAAGGCACTTGAAGGGTTATGGGAGAAGTTATTTGAAGTAGAGAGTCCT CTAGTAGTGTTTACTCCTTATGGTGGAATGATGAGCCAAATTTCAGAATCTCAGACTCCTTTCCCTCATAGAAAAGGTACCAAGTTCATGATTCTGTACT ATACCGGTTGGCAAGATGCAAAGGAAAACGTTGCAAAGCATATAGATTGGACTAGGATGGTTTACAATTACATGAAACCTTATGTCTCGAAGAACCCAAG GGAAGCATATGCGAATTACAGGGATCTTGATTTGGGCATGAACAACAATTCTAACACAAGTTTTGTTGAAGCGAGTGCTTTTGGTACTAAGTACTTCAAG GATAACTTCTACAGGTTGGTGCATGTGAAGACCAAAGTTGATCCTGATAATTTCTTCAGGCACGAACAAAGCATTCCACCACTTCCACTGCACATGAGAT AA
AA sequence Show only first row Show all	>Potri.011G161400.1 pacid=42780405 polypeptide=Potri.011G161400.1.p locus=Potri.011G161400 ID=Potri.011G161400.1.v4.1 annot-version=v4.1 MVPSRSSILSILVVLLLSPFIVSLPIQDRFLKCLSKYSDTSFPFSTVLYTPQNSSFTTVLQSSAQNLRFTSPSVPKPEFIFTPLQESHIQAVVICSKQLG IHLRVRSGGHDYEGLSYVSEIEKPFVVVDLAKLRSISVDIEHNSAWVQVGVTNGELYYRISEKSKTHGFPAGTCTSLGMGGHISGGAYGAMLRKYGLGAD NVVDAHLIDVHGRLLNRKLMGEDLFWAIRGGAGGSFGIVTAWKLKLVPVPSTVTVFTVTKTLEQGATKILYRWQEIADKLDEDLFIKVLIQTANVTSQGK RTIATSYNSLFLGDARRLLQIMQRSFPELGLTRKDCIETNWINSTVFMALLQNNTPPEVFLQRKDPNRRYFKAKSDYAKKPVSEKALEGLWEKLFEVESP LVVFTPYGGMMSQISESQTPFPHRKGTKFMILYYTGWQDAKENVAKHIDWTRMVYNYMKPYVSKNPREAYANYRDLDLGMNNNSNTSFVEASAFGTKYFK DNFYRLVHVKTKVDPDNFFRHEQSIPPLPLHMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30760			FAD-binding Berberine family p...		Potri.011G161400 [exp]	0	1
AT3G53810			Concanavalin A-like lectin pro...		Potri.009G035400 [exp]	2.64	0.8803
AT3G61420			BSD domain (BTF2-like transcri...		Potri.005G061366 [exp]	3.16	0.9029
AT1G30760			FAD-binding Berberine family p...		Potri.011G160700 [exp]	7.21	0.8904
AT1G08760			Plant protein of unknown funct...		Potri.007G131600 [exp]	8.77	0.8066
					Potri.011G149950 [exp]	8.94	0.8364
AT3G13410			unknown protein		Potri.003G223601 [exp]	11.95	0.8646
AT4G35590		RKD5	RWP-RK domain-containing 5, RW...		Potri.005G101000 [exp]	12.16	0.8076
AT1G30760			FAD-binding Berberine family p...		Potri.011G161300 [exp]	12.60	0.8284
					Potri.001G255904 [exp]	16.43	0.8981
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.002G139600 [exp]	19.05	0.8409

Compare expression of checked genes

Potri.011G161400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.