Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G30760 632 / 0 FAD-binding Berberine family protein (.1) AT2G34790 612 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT5G44390 577 / 0 FAD-binding Berberine family protein (.1) AT5G44400 577 / 0 FAD-binding Berberine family protein (.1) AT5G44380 550 / 0 FAD-binding Berberine family protein (.1) AT1G30700 504 / 5e-175 FAD-binding Berberine family protein (.1) AT4G20820 483 / 1e-166 FAD-binding Berberine family protein (.1) AT5G44360 474 / 2e-163 FAD-binding Berberine family protein (.1) AT1G30710 461 / 3e-158 FAD-binding Berberine family protein (.1) AT4G20860 458 / 6e-157 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G159600 [exp] 811 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 801 / 0 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 801 / 0 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 796 / 0 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 796 / 0 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161300 [exp] 785 / 0 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160700 [exp] 783 / 0 AT1G30760 627 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161600 [exp] 777 / 0 AT5G44400 631 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G158901 [exp] 771 / 0 AT1G30760 595 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023361 [exp] 659 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 592 / 0 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 592 / 0 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038439 [exp] 508 / 2e-176 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 492 / 2e-170 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038446 [exp] 481 / 6e-166 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 474 / 5e-163 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10035466 [exp] 471 / 5e-162 AT1G30700 585 / 0.0 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 468 / 7e-161 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10023375 [exp] 464 / 4e-159 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G161500.1 pacid=42781034 polypeptide=Potri.011G161500.1.p locus=Potri.011G161500 ID=Potri.011G161500.1.v4.1 annot-version=v4.1 ATGGTTCCTTCCAGATTTTCCGTTCTTTCAATACTTGTAGTTCTTGTGTTAACACCATCTCGGATGGGTTCACATCCTATTCAGGATCAGGATAGGTTTC TACAGTGTCTATCTAGAAATTCTGAATCGTCCATTCCTTTTTCCACTGTCTTGTATTCTCCTATTAACTCTTCCTTCACCGCTATTTTACGTTCTTCTGC TCAAAACCTCAGGTTTACATTGCCTTCCCTGCCGAAACCTGAGTTTATCTTTACTCCTTTGGAAGAATCTCACATTCAAGCTGCTGTAATTTGCTCAAAA CAGCTTGGAATCCACCTTAGAGTCCGCAGTGGAGGCCATGACTATGAGGGACTCTCTTATGTTTCTGAAACTGATACACCTTTCGTTGTTGTTGACATTG CTGAGCTTCATTCTATTAGTGTTGATATCGACAATAATAGTGCATGGGTTCAGGCAGGTGCCACAAATGGTGAACTCTACTACAGAATTGCTGAGCAAAG CACAACTCATGGCTACCCGGCTGGTACCTGCACAAGTTTAGGTATTGGTGGGCACATTACAGGAGGTGCATATGGCTCCATGATGAGAAAATATGGGCTT GCTGTAGACAATGTCATTGATGCGCGTATAATTAACGTTCATGGAAGAGTTCTTGATCGACAAACTATGGGAGAAGATCTATATTGGGCAATTAGAGGAG GTGGAGGAGGCAGCTTCGGAATAATTACTGCTTGGAAGGTAAAATTGGTTCCAGTACCATCAACTGTGACTATATTTACAGTTACCAAGTCCTTAGAGCA AGGTGCTACTAAGCTCTTATTTAGATGGCAACAGGTTGCTGATAAACTTGACGAGGATCTCTTCATCAGAGTCAATATACAGACAGTTAATGTCAGTAAC AAAGGTGGAAGGACTATAACGACTTCCTATGATGCCTTGTTTCTTGGTGATGCCAACAGACTTCTCCAAGTAATGCGAGAAAGCTTTCCTGAACTGGGTT TGGCAAGACAGGACTGTATCGAAACAAGCTGGATCAATTCTACTGTATATCTTGGTGGCTACACCATCAATACATCTCCTGAAGTTTTACTTCAAAGAAG AAATATATTGAAGCACTACTTCAAAGCCAAGTCAGACTTCGTTAGACAACCTATACCTGAAACTGCTCTCAAAGGGTTATGGGAAATAATGTTAGAAGAA GACAATCCAGCTATAGTTCTTACCCCTTATGGTGGAAACATGGGCAAAATTTCCGAATCTCAGACTCCTTTCCCTCATAGAAAAGGTACCTTGTTCATGA TCCAGTACTTGGCCAATTGGCAAGATGCGAAAGAAAATGTTAGAAAACATACCGATTGGACTAGGATGGTTTACAGGTACATGAAACCTTATGTTTCCAT GTTTCCAAGACAAGCATATGTCAATTACCGGGACCTTGATTTGGGAATAAACAAGGAGACGAACACAAGCTTTCCAGAAGCAAGTGTTTGGGGCACTAAG TACTTCAAGGATAACTTCTACAGACTGGTACGGGTGAAGACCAAAGTTGATCCTGACAACTTCTTCAGGCATGAACAGAGCATCCCAACTCTTCCACATC ATATGAGGAAAAGAAATTGA
AA sequence Show only first row Show all	>Potri.011G161500.1 pacid=42781034 polypeptide=Potri.011G161500.1.p locus=Potri.011G161500 ID=Potri.011G161500.1.v4.1 annot-version=v4.1 MVPSRFSVLSILVVLVLTPSRMGSHPIQDQDRFLQCLSRNSESSIPFSTVLYSPINSSFTAILRSSAQNLRFTLPSLPKPEFIFTPLEESHIQAAVICSK QLGIHLRVRSGGHDYEGLSYVSETDTPFVVVDIAELHSISVDIDNNSAWVQAGATNGELYYRIAEQSTTHGYPAGTCTSLGIGGHITGGAYGSMMRKYGL AVDNVIDARIINVHGRVLDRQTMGEDLYWAIRGGGGGSFGIITAWKVKLVPVPSTVTIFTVTKSLEQGATKLLFRWQQVADKLDEDLFIRVNIQTVNVSN KGGRTITTSYDALFLGDANRLLQVMRESFPELGLARQDCIETSWINSTVYLGGYTINTSPEVLLQRRNILKHYFKAKSDFVRQPIPETALKGLWEIMLEE DNPAIVLTPYGGNMGKISESQTPFPHRKGTLFMIQYLANWQDAKENVRKHTDWTRMVYRYMKPYVSMFPRQAYVNYRDLDLGINKETNTSFPEASVWGTK YFKDNFYRLVRVKTKVDPDNFFRHEQSIPTLPHHMRKRN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G30760			FAD-binding Berberine family p...		Potri.011G161500 [exp]	0	1
AT4G17920			RING/U-box superfamily protein...		Potri.003G093500 [exp]	1.73	0.9402
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.015G013300 [exp]	3.16	0.9605
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Potri.001G468900 [exp]	3.87	0.9029
AT4G35190		LOG5	LONELY GUY 5, Putative lysine ...		Potri.004G181800 [exp]	4.24	0.8993
					Potri.019G062666 [exp]	5.09	0.9083
AT1G57680			unknown protein		Potri.012G023500 [exp]	5.09	0.8755
AT4G18335			unknown protein		Potri.004G132400 [exp]	5.65	0.9151
AT3G24220		ATNCED6, NCED6	nine-cis-epoxycarotenoid dioxy...		Potri.003G176300 [exp]	6.63	0.8882
AT5G19040		ATIPT5	Arabidopsis thaliana ISOPENTEN...		Potri.008G033300 [exp]	6.92	0.8469
AT3G57450			unknown protein		Potri.012G032500 [exp]	8.12	0.9313

Compare expression of checked genes

Potri.011G161500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.