Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44400 631 / 0 FAD-binding Berberine family protein (.1) AT2G34790 617 / 0 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G30760 600 / 0 FAD-binding Berberine family protein (.1) AT5G44390 573 / 0 FAD-binding Berberine family protein (.1) AT5G44380 545 / 0 FAD-binding Berberine family protein (.1) AT4G20820 481 / 5e-166 FAD-binding Berberine family protein (.1) AT1G30700 473 / 6e-163 FAD-binding Berberine family protein (.1) AT5G44360 464 / 4e-159 FAD-binding Berberine family protein (.1) AT4G20860 447 / 2e-152 FAD-binding Berberine family protein (.1) AT1G26380 438 / 3e-149 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G161300 [exp] 845 / 0 AT1G30760 624 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161400 [exp] 843 / 0 AT1G30760 616 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159600 [exp] 842 / 0 AT1G30760 642 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160900 [exp] 833 / 0 AT1G30760 646 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161100 [exp] 832 / 0 AT1G30760 639 / 0.0 FAD-binding Berberine family protein (.1) Potri.006G128900 [exp] 823 / 0 AT1G30760 638 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G159400 [exp] 798 / 0 AT1G30760 607 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G161500 [exp] 796 / 0 AT1G30760 632 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G160700 [exp] 793 / 0 AT1G30760 627 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023361 [exp] 647 / 0 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10018119 [exp] 595 / 0 AT2G34790 641 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10036147 [exp] 590 / 0 AT2G34790 626 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023375 [exp] 491 / 7e-170 AT1G30700 606 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 489 / 2e-169 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10032943 [exp] 470 / 2e-161 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 457 / 2e-156 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 457 / 2e-156 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 454 / 7e-156 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10038436 [exp] 444 / 1e-151 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G161600.1 pacid=42780800 polypeptide=Potri.011G161600.1.p locus=Potri.011G161600 ID=Potri.011G161600.1.v4.1 annot-version=v4.1 ATGGTGTCTTCAAGATCTTCCATTCTTTCGATGCTTCTGTTCCTCCTCCTAACTCCATTTGTAGTTTCACTTCATCTTCAGGATAGGTTTCTAAAATGTC TCTCAAGAAATTCTGAATCATCCTTTCCTTTCTCCACTGTCTTGTATGCTCCAAACAACTCATCATTCAATAGTATTTTACTATCTACTGCTCAAAACCT CAGGTTTACGCTGCCTTCAGTACCGAAACCTGAGTTAATCTTCACTCCTTTGAAAGAATCTCACATCCAAGCTGCGGTTATTTGCTCAAAGAAGCTTGAG ATTCACCTTAGAGTCCGTAGTGGAGGCCATGACTATGAGGGACTCTCTTATGTATCTGAAATTGAGAGACCTTACATAATTGTCGACCTTGCCAAGCTCC GATCCATTAGCGTTGATATTGAGGATAACAGTGCGTGGGTTCAGGTGGGTGCCACGAATGGTGAACTTTACTACAGAATTTCTGAGAAAAGCAAAACTCA TGGCTTCCCAGCTGGTACTTGCTCAAGTTTAGGTATGGGGGGGCACATTTCAGGAGGTGCATATGGTGCCATGTTGCGAAAATATGGCCTTGGAGCAGAT AATGTCGTTGATGCACATATAATTGATGTTCATGGAAGACTTCTTGACCGAAAATCCATGGGCGAAGATCTTTTTTGGGCCATCAGAGGAGGTGCAGGGG GCAGCTTCGGAATCGTCACGGCCTGGAAGGTAAAATTGGTTTCTGTACCATCAACGGTGACAGTATTTACAGTTACTAAGACATTAGAACAAGGTGCAAC TAAGATCCTTTATAGATGGCAAGAAATTGCTGATAAACTAGACGAGGATCTTTTCATCAGAGTACTCATTCAGACAGCTAACGCCACCTCCCAAGGTAAA AGAACTATTGCTACCTCTTACAATGCCTTGTTTCTTGGTGATGCCACCAGACTTCTTCAGATAATGCACCACAGCTTCCCTGAATTAGGTTTGGCCCGAC AGGATTGTATTGAAACAGACTGGATCAATTCTACCGTATACCTTGCTTTCTTCCCAAATAATACTCCTCCTGAAGTTTTACTTCAACGGAGGAATATAGT CAAGCTATTCTTCAAAGCCAAGTCGGACTACGCCAAAGAACCTTTACCTGAAACTGCACTTGAAGGGTTATGGGATATTATACTGGAAGAAGAGCTTCCT ACAGTAGCATTTACTCCTTATGGTGGAAAGATGAGTGAAATTTCTGAGTCTCAGATTCCTTTCCCTCATAGAAAAGGTATCCGGTTCATGATTTTGTACT CGGCCAATTGGCAAGATGCAAAGGAAAATGTTGCAAAGCATGTAGATTGGACCAGGAAGGTTTACAAGTACATGCAACCTTATGTTTCCAAGCATCCAAG GGAAACATATGTCAATTACAGGGATCTTGATTTGGGCATAAACAAGAGGACTAACACAAGCTTTACAGAAGCAGGTACTTCCTGGGGTCTTAAGTACTTC AAGAATAACTTCCACAGATTGGCATTTGTGAAGGCCAAAGTTGATCCTGACGACTTCTTCTGGCATGAGCAGAGCATCCCACCTCTTCCATTTCACATGA GATGA
AA sequence Show only first row Show all	>Potri.011G161600.1 pacid=42780800 polypeptide=Potri.011G161600.1.p locus=Potri.011G161600 ID=Potri.011G161600.1.v4.1 annot-version=v4.1 MVSSRSSILSMLLFLLLTPFVVSLHLQDRFLKCLSRNSESSFPFSTVLYAPNNSSFNSILLSTAQNLRFTLPSVPKPELIFTPLKESHIQAAVICSKKLE IHLRVRSGGHDYEGLSYVSEIERPYIIVDLAKLRSISVDIEDNSAWVQVGATNGELYYRISEKSKTHGFPAGTCSSLGMGGHISGGAYGAMLRKYGLGAD NVVDAHIIDVHGRLLDRKSMGEDLFWAIRGGAGGSFGIVTAWKVKLVSVPSTVTVFTVTKTLEQGATKILYRWQEIADKLDEDLFIRVLIQTANATSQGK RTIATSYNALFLGDATRLLQIMHHSFPELGLARQDCIETDWINSTVYLAFFPNNTPPEVLLQRRNIVKLFFKAKSDYAKEPLPETALEGLWDIILEEELP TVAFTPYGGKMSEISESQIPFPHRKGIRFMILYSANWQDAKENVAKHVDWTRKVYKYMQPYVSKHPRETYVNYRDLDLGINKRTNTSFTEAGTSWGLKYF KNNFHRLAFVKAKVDPDDFFWHEQSIPPLPFHMR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44400			FAD-binding Berberine family p...		Potri.011G161600 [exp]	0	1
AT1G30760			FAD-binding Berberine family p...		Potri.011G158901 [exp]	1.41	0.9017
AT4G34640		ERG9, SQS1	squalene synthase 1 (.1)		Potri.009G123100 [exp]	4.00	0.7798	SQS1.2
AT2G41310		ARR8, ATRR3	RESPONSE REGULATOR 8, response...		Potri.001G027000 [exp]	7.48	0.7465
AT1G53035			unknown protein		Potri.001G399900 [exp]	24.31	0.7826
AT3G11800			unknown protein		Potri.004G146800 [exp]	24.55	0.6817
AT1G71691			GDSL-like Lipase/Acylhydrolase...		Potri.010G137100 [exp]	38.57	0.7063
AT5G51400			PLAC8 family protein (.1)		Potri.003G108800 [exp]	39.87	0.7064
AT1G19600			pfkB-like carbohydrate kinase ...		Potri.002G034000 [exp]	40.90	0.7480
AT4G00720		ASKTHETA, ATSK3...	SHAGGY-LIKE PROTEIN KINASE THE...		Potri.002G155000 [exp]	56.67	0.7173
AT4G29210		GGT4, GGT3	gamma-glutamyl transpeptidase ...		Potri.018G069450 [exp]	61.50	0.6666

Compare expression of checked genes

Potri.011G161600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.