Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34780 253 / 5e-68 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463700 [exp] 2259 / 0 AT2G34780 360 / 4e-103 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Potri.007G004001 [exp] 197 / 3e-58 AT2G34780 55 / 2e-09 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023360 [exp] 516 / 2e-155 AT2G34780 312 / 2e-87 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2) Lus10038447 [exp] 407 / 9e-116 AT2G34780 323 / 1e-100 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G161901.2 pacid=42782255 polypeptide=Potri.011G161901.2.p locus=Potri.011G161901 ID=Potri.011G161901.2.v4.1 annot-version=v4.1 ATGGCTGCTGATGTTTCAGTAAAGAAGGAAGCCACAGTGAATAATCCATGCTGCAAAGTGTGGAAAGAGAAGTGTGGGAAGTTGGAAGAAGGAAGGAAGT GTTTGAGGCAAGCAGTTAAGCTTTTGACTGAACAAGCTGATAAGTTTCAAGCTGAGAATGTTAGTATCAATAAAGCTTGTGAGGAAGAGAGAGCGAAGGT GGAAGCTGCAAAAGAGGGGAGAGAAAAAGAAGCGGCTTTGAGAGTTAAATTGGAGAAGGAGATTTCTGCCCTCCAGTCTGAAGTATCCACCTTAAATCAG AAGGGAAGTGCATTTCCAGAAGTTGAAAATACAGAGGTTAAGCTGCTTCAAGATCAGATTTTTAAAGGAGAGAAGGAAATCAGTAGGCTTAAGGAGCTTC TTGAGAGAGAGAAACTAAGAGCAGATTCTGAAAAGAAGAATGCTGAAGTGGAGAAGAAGAGTGCTGCTGATGCATGGAAGCATGTAAAAGCTGAGAAAGA GGGGAAAGAGAAAGAAGCGGCTTTGAGAGTCTCTTTGGAAAATGAGATTTCTGCCCTTAAGTCTGAAATATCATCCTTACAGCAGAAGGGAAGTATGGTC GATGAAGACAAAAATGGGGAGGTTAAGCTTCTTCAAGATCAAGTTTCTAAAGGGGAGAAGGAAATCAGTAGGCTCAAGGAGCTTCATGAGAGAGAGAAGA CAAGGGCGGAATCTGAAAAGAAGAAGGCTGAGGTGGAGAGGAAGAGAGCTGCTGAAGCATGGCAACAAGTGAAAGCTGAAAAGGCTAAGGCCGATGAAGA GAGGAAGCATGCTAGTAGTGAGTGGAAGAAGGCTGAGGAATATCGGCTTCAGTTGGAGACATTGACGAAAGAAGCTGAGCTAGCAAAATCAAAGTTGGCT TCTGAAACTTTGAAGTTTGAAGAGGCAAACAAGAAGTTTGAAGCAGAAAAACTCAAGGTGACCAAAGAGAAAAAGCATGCTGATTCAGAGATGGCGAAAG CAGAGGCGCATAGAAAGCTTGCAGAAGCAAACTGGAAGAAGCTCATGGAAGAACAATCTCACACTGAAAATATTTGCAAGCAGTTGGAAGATGCGAGAAA AAGAATTGAGAAACCACAGAAGGCTGAGGAATATCAGCGTCAGTTAGAGTCTTTAAAAAAAGAAGCTGCTGAGTCAAAATCAAAATTGGTTGCTGAGACT CTGAAGCTTGAAGATGCAAACAAAATGTTAGAAGCAGAAAAAGCTAAGGTGATGAAAGAGAGAAAACGTGCTGATTCAGAGGTGGCTACAGCAAAGGAGC AAAGGAAACTTGCTGAAACAAATGGAAGGAAGGTCATAGAGGAAAAGTCTCGTGCTGATAATCTTTCTCGGCAGTTGGAAGATGCTAGAATAAAGATTGA GGAACTGGAGAAGGGGATAAATGGATTCATACAGTCCAAAAATATGGGTGGGACTTTTGATGATCAACATGATGAAACCACGAATGGTGAAGATGCCACA ATTAGGGATTCATTGGAAAATTTGAAGAACAATTCAGATCAATCAAAGCTGGTTTTGGAGTTCTTAAATAACAAGGAAGCAACCAAAAGGTTAGATATTG AGAAGCGAAAAGCTATTACTGAGAAAAAACGTGCAGATTCAGAGATGGTGAAAGCAGAAAAGCTAAGAAACCTTTCAAAAATGAATAGAAAGATAGCAGC AGAAGAAAAATCCCGTGCTGATCAGCTGTCTCGTCAGCTTGATGAAGATAAAATAAAGATTGAAGAATTGCAGAAGCAGATACAGGAACTCCAATCCTCC AAAAAAGTTGTTGTGGCTTCTTCAGTTTTACCTGACAAAGTTATGAATGTGGAAAAGACAAAACTGAAGTTCTTGGAAAAGCAAGTGAAGCTTGAAAAGA TGCGATTAAAGCATGCCAAAGTAGTGGCTAAGATGGAAAAAAACCGTAATAGTTTTCTTCAGCAAGAACTAGCTCGCTTGAAGCTTGATTTTGGTCAAAT GTTGTTTCGCCTTGATGTACTGGATAGATATTTCTCATCCAGCGATGGAGGTACAGAGAAAATGGTAAAGTTTGGAAACCACGGAACCATGCAAAGGTCA AAGTTGAACAGAAAACTGTGTGCAGAAGAACAATGTCAGATGTATTCTAATAATGAAAGTGAACTTCTGAAGCCTAGTTGCATGGCTTTGGCTGTCTCTG AACCTCCCACGCAAACACTTCACTGTACAGTTCCGCTGGTTTCGCCATCCAGTGGGAACTATGCTGCCTCCATCTCAGGTATTGATTCTAAATTGGAGTC TCTGCTTGGAGGCTCTAACCAAAAACTGTTACAGACTTCTGCAATAAATTCCAGTTCGGCATCTTTTTCTGATGGTCAGTTGGTCGGATCACAGGAAAGG GGTCCATTTTTTCCCACATCAAAGAACTTGGTAGAAGATAACTTTAGGGCACAGACAACAATTTCTGGAATGTCTGATGAAGTCACTAAAGTACAGCACA ATGAAAATCTTGCTGTGGTAGCTGACAATAGTGTTAGAAGTCCTCCTAGCTTTGACGTGATTGGAAGAGTTAATAGACATGGTAGGAAGAGGAGGATCCT TGATGCAGTTGAATCTGTTGAACTTTTGTATTCGGAGGGTAAGAAGCTGCATCTGCAGATGGAAGAGAAACTCTCTGCCTTGCATGGTATGTTAAACAGG CAAATTGAAAAACCAAAGGAAGAAGCCAAATATGTAGAACCTAATTTGCAAGGTGGTTCATATGGTAAGCATGGGAGGATTCATAAGAAAAAAAAGATAT CTCATGAAGAGAATGTAATTGTCCACCGTTTATCTGGCATAGATCAGCTGGAGAAGACTGAAATAACTGGGAAAGAGGTCCATGAAGATGCAAATGCCTG TGGATATATCTCCACTACTGCCAATAATTTATTGGAAGCCTCAAAAGCATGCAGGGAAGGTTTGAGTTATTCTTTTGAAAGTAGCCCTGAAGGTATGGTA AGTTTTGAGGAAGTAGCCAATGGGGATTATATGAAATTGTTGGACTTGGATAACACTGCAGATGAGGAATGTTACAGGAGAGCAATGGAAATGCCTATGT CCCCAATTCTTCCTGAGATAGGGTCTTCAGGTGCTGAAATATCTGATAACATGGATAATTTTAAACCCATGCTTGATGAAAGCTTCCCTGGAAGTTTACC TAATGGAAAGGAATCTCTAGTGCCTTATTTCAGATTAGATGTCATTGATGCTGAAATTAGTTCCAAACAATTAAAAGACTGCTCCTTTGGAATTTCCTGT GCTGATGGACTGCATGAAAATGGAGGCCATGCAGATTCCCTTGATACATTAGGCAATAGAAGTGGCACTGGTAACGATGTTGATGCTGGAAAAGCTTCTG ATGGTCAGACCAGAGGTTGTGGATCGGGATTGGAGATTGAGATGCTGAATATACCTAGTTCTAGTTATGAGGGCCTGAAGTTTCCAATTGAAGGCGAACC TGGTTCTAGACACGACAATATTCCTAAATACTGTGTTATGCAGTCAGATATAAAGGACACTATAAGCATGTCTAGAGTATTATCTGCGACTCGAACTTGT ATGACACGCTGTTCTTTGGACATTCAAGCAGATTGTTTGGTTCAGAAGATCCTTTGTGCTCTAAAACTGGAAGAGAACAGTTTACCCAAGGAGAAGGCTT GCACATTTTTCACGTTGCTGCTGCTGAATTTCTCTGCTTGCAATTGGGGGCAATTTGGAAGCTTTTCGGATCAGGACTTTCTCTTCTGCTTAGATTCTTT TGCCAAAGACATATTTGCAGCTGTCTCTGATGTTGAGGCAAGAAACTTGTTTGCGGAGGCATGTTGTTTGGATGAACTGCTTGGCCTCATTGAAGAATTC CTCCTAGATGGGAAACTGATGATATATGCAGATCTATCTTCTGAATCATTGAGTGGATGCGATTCAATGATAGACATCCTTCTGGATGGTGTAAATATAA AATTTGCCTCCAAATCAGCTTCAGCTGACCTTTTAGTGGCTGGAAGTATCATACTAGCTTCAATATGTGCAGCAGTTGACTGCATTGGATTTCTTTGTCA GGCTTCATACAGTCTTCTGCTGATGCACAAATGTGATACTGTTTTTGTACTTACTATTCTACACATTTTTTCTTACCTGGCTGGAGAGAAGTTTTTCTCC CTGAGGGAGCACAATTTGACAATGACTGTGTTGAAATCAATAATAATGTTTCTTGAAGGGGGGGATTCACCAGTTGCTTCAGCAGCTTCCAGTCTTACCA GGTACAAGGGTGGAATGTTCCATCCATGTGCTAAATGCCCATTCTCAACAGATGCTGTTTCCATAGATACTGTTACATCAGTGCTCTTGGAAAAGCTTCA GAATTGTGCTGTTTCTGGAATCATGCATCATCCAATGAAATCACCCAGCGTGTCAAATTCCAATGTACTATGCTGTAAGGATACAGCTAAACTGAGTTTA AATCAAGAAGAGGTTCATTCTGCCCTTGATATGAATTGTGATACATCCTGTAGTTTAAAAAAGTGTGTGATGCCTGCGAGATCAAATTCTATCATGAATG AGACTTTGTGTGGCCTCAGTGATCTTCTATCTTTGGTTGAGTTGCTTGCTTGCAATATGAGCTGGGAGTGGACCTGTAGCAAAATTATACCTGAGCTGTT GGAAATGCTAGAAAGAACTAAGTTAGACAACTTTGCTGCTGCTGTACTTATTCTCCTTGGTCAACTTGGAAGGCTCGGAGTTTCTGCTTTTGGCTATGAA GATAATGGAGTAGAGAACTTGAGGTGTAAATTGTCTGGTTTTCTTTCACGGGATGCTACCATCAGAATGGCTCTTCCTGTTCAAATTGCTTTGGCCACTG CTTTGCTAGGTCTACTTTCTCTTGATTTTGAGAAACTTATCCAGAGCAATTCTTGCCTCCCAGCAATGTCACGTCAATCCGTTTCCATTGATCATATAAG AAGCTGGTTTTCTTCACTGACCAAGGAGCAGCAAGCATTGTCACTCAGCCTCTTACCATCTTCTGATGTCCGCTGA
AA sequence Show only first row Show all	>Potri.011G161901.2 pacid=42782255 polypeptide=Potri.011G161901.2.p locus=Potri.011G161901 ID=Potri.011G161901.2.v4.1 annot-version=v4.1 MAADVSVKKEATVNNPCCKVWKEKCGKLEEGRKCLRQAVKLLTEQADKFQAENVSINKACEEERAKVEAAKEGREKEAALRVKLEKEISALQSEVSTLNQ KGSAFPEVENTEVKLLQDQIFKGEKEISRLKELLEREKLRADSEKKNAEVEKKSAADAWKHVKAEKEGKEKEAALRVSLENEISALKSEISSLQQKGSMV DEDKNGEVKLLQDQVSKGEKEISRLKELHEREKTRAESEKKKAEVERKRAAEAWQQVKAEKAKADEERKHASSEWKKAEEYRLQLETLTKEAELAKSKLA SETLKFEEANKKFEAEKLKVTKEKKHADSEMAKAEAHRKLAEANWKKLMEEQSHTENICKQLEDARKRIEKPQKAEEYQRQLESLKKEAAESKSKLVAET LKLEDANKMLEAEKAKVMKERKRADSEVATAKEQRKLAETNGRKVIEEKSRADNLSRQLEDARIKIEELEKGINGFIQSKNMGGTFDDQHDETTNGEDAT IRDSLENLKNNSDQSKLVLEFLNNKEATKRLDIEKRKAITEKKRADSEMVKAEKLRNLSKMNRKIAAEEKSRADQLSRQLDEDKIKIEELQKQIQELQSS KKVVVASSVLPDKVMNVEKTKLKFLEKQVKLEKMRLKHAKVVAKMEKNRNSFLQQELARLKLDFGQMLFRLDVLDRYFSSSDGGTEKMVKFGNHGTMQRS KLNRKLCAEEQCQMYSNNESELLKPSCMALAVSEPPTQTLHCTVPLVSPSSGNYAASISGIDSKLESLLGGSNQKLLQTSAINSSSASFSDGQLVGSQER GPFFPTSKNLVEDNFRAQTTISGMSDEVTKVQHNENLAVVADNSVRSPPSFDVIGRVNRHGRKRRILDAVESVELLYSEGKKLHLQMEEKLSALHGMLNR QIEKPKEEAKYVEPNLQGGSYGKHGRIHKKKKISHEENVIVHRLSGIDQLEKTEITGKEVHEDANACGYISTTANNLLEASKACREGLSYSFESSPEGMV SFEEVANGDYMKLLDLDNTADEECYRRAMEMPMSPILPEIGSSGAEISDNMDNFKPMLDESFPGSLPNGKESLVPYFRLDVIDAEISSKQLKDCSFGISC ADGLHENGGHADSLDTLGNRSGTGNDVDAGKASDGQTRGCGSGLEIEMLNIPSSSYEGLKFPIEGEPGSRHDNIPKYCVMQSDIKDTISMSRVLSATRTC MTRCSLDIQADCLVQKILCALKLEENSLPKEKACTFFTLLLLNFSACNWGQFGSFSDQDFLFCLDSFAKDIFAAVSDVEARNLFAEACCLDELLGLIEEF LLDGKLMIYADLSSESLSGCDSMIDILLDGVNIKFASKSASADLLVAGSIILASICAAVDCIGFLCQASYSLLLMHKCDTVFVLTILHIFSYLAGEKFFS LREHNLTMTVLKSIIMFLEGGDSPVASAASSLTRYKGGMFHPCAKCPFSTDAVSIDTVTSVLLEKLQNCAVSGIMHHPMKSPSVSNSNVLCCKDTAKLSL NQEEVHSALDMNCDTSCSLKKCVMPARSNSIMNETLCGLSDLLSLVELLACNMSWEWTCSKIIPELLEMLERTKLDNFAAAVLILLGQLGRLGVSAFGYE DNGVENLRCKLSGFLSRDATIRMALPVQIALATALLGLLSLDFEKLIQSNSCLPAMSRQSVSIDHIRSWFSSLTKEQQALSLSLLPSSDVR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Potri.011G161901 [exp]	0	1
AT1G03530		ATNAF1	nuclear assembly factor 1 (.1)		Potri.013G145300 [exp]	1.41	0.8660
AT2G46040	ARID		ARID/BRIGHT DNA-binding domain...		Potri.014G086700 [exp]	3.00	0.7869
AT3G01160			unknown protein		Potri.005G108800 [exp]	3.46	0.8521
AT5G41770			crooked neck protein, putative...		Potri.001G094400 [exp]	3.46	0.8260
AT3G18600			P-loop containing nucleoside t...		Potri.001G250700 [exp]	5.65	0.7908
AT3G55160			unknown protein		Potri.004G128601 [exp]	6.70	0.7720
AT3G55340		PHIP1	phragmoplastin interacting pro...		Potri.010G209701 [exp]	8.12	0.8059
AT5G21160			LA RNA-binding protein (.1.2.3...		Potri.001G220100 [exp]	9.16	0.7673
AT3G16840			P-loop containing nucleoside t...		Potri.010G063600 [exp]	9.38	0.7834
AT5G66540			unknown protein		Potri.015G078500 [exp]	11.22	0.7700

Compare expression of checked genes

Potri.011G161901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.