Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-FAH1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34770 374 / 4e-133 ATFAH1, FAH1 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) AT4G20870 365 / 1e-129 FAH2, ATFAH2 ARABIDOPSIS FATTY ACID HYDROXYLASE 2, fatty acid hydroxylase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G463800 [exp] 460 / 5e-167 AT2G34770 376 / 9e-134 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023359 [exp] 420 / 4e-151 AT2G34770 366 / 9e-130 ARABIDOPSIS FATTY ACID HYDROXYLASE 1, fatty acid hydroxylase 1 (.1) Lus10038447 [exp] 367 / 6e-117 AT2G34780 323 / 1e-100 EMBRYO DEFECTIVE 1611, maternal effect embryo arrest 22 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04116 [poplar] [flax] FA_hydroxylase Fatty acid hydroxylase superfamily
Representative CDS sequence Show only first row Show all	>Potri.011G162000.1 pacid=42780369 polypeptide=Potri.011G162000.1.p locus=Potri.011G162000 ID=Potri.011G162000.1.v4.1 annot-version=v4.1 ATGGTCGCACAGGAATTCACTGTCGATCTAGATAAGCCCCTTGTCTTCCAGGTTGGCCATCTAGGAGAAGCTTATGAAGAATGGGTCCACCAGCCTATTG TAAGCAGGGAAGGCCCTCGGTTTTTTGAGAGTGATTTTATGGAGTCCTTGACACGCACAGTTTGGTGGGCAATTCCATCTATTTGGCTGCCTGTTATATG CTATTTTGTCTTAAAATCTGTAAGGATGGGCCATACGCTTTCCGAGGTAGCCTTAATTGTGGTTGGTGGTGTTTTCATTTGGACATTGCTCGAATACACT TTGCATCGCTTCCTTTTCCACATAAAAACAAAAAGCTATTGGGGGAACACAATGCATTATCTTCTTCATGGTTGTCATCATAAGCACCCTATGGATGGTC TCCGCCTTGTTTTTCCTCCAGCAGCAACAGCTATTCTCTTGGTGCCGTTCTGGAACATGGTCAAGTTGTTTTCTACTCCTTCAACTACTCCTGCTCTTTT TGGAGGTGGTTTACTGGGCTATGTGATATACGACTGCACTCATTACTACCTGCACCATGGTCAGCCCGCAAATGATGTACCAAAAAATCTCAAGAAATAT CACATGAATCATCACTTCCGGGTGCAAGATAAGGGCTTTGGAATCACTTCATCATTGTGGGACAGAGTGTTTGGAACACTTCCTCCATCAAAAGTGGCAA AGAAAATATAG
AA sequence Show only first row Show all	>Potri.011G162000.1 pacid=42780369 polypeptide=Potri.011G162000.1.p locus=Potri.011G162000 ID=Potri.011G162000.1.v4.1 annot-version=v4.1 MVAQEFTVDLDKPLVFQVGHLGEAYEEWVHQPIVSREGPRFFESDFMESLTRTVWWAIPSIWLPVICYFVLKSVRMGHTLSEVALIVVGGVFIWTLLEYT LHRFLFHIKTKSYWGNTMHYLLHGCHHKHPMDGLRLVFPPAATAILLVPFWNMVKLFSTPSTTPALFGGGLLGYVIYDCTHYYLHHGQPANDVPKNLKKY HMNHHFRVQDKGFGITSSLWDRVFGTLPPSKVAKKI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34770		ATFAH1, FAH1	ARABIDOPSIS FATTY ACID HYDROXY...		Potri.011G162000 [exp]	0	1	Pt-FAH1.1
AT3G56810			unknown protein		Potri.006G026600 [exp]	1.00	0.9582
AT5G57330			Galactose mutarotase-like supe...		Potri.001G037700 [exp]	1.41	0.9574
AT1G79500		ATKDSA1, KDSA	Aldolase-type TIM barrel famil...		Potri.002G061900 [exp]	3.46	0.9454	KDSA.1
AT5G43460			HR-like lesion-inducing protei...		Potri.010G073500 [exp]	4.00	0.9426
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Potri.006G250300 [exp]	4.58	0.9169	Pt-RAN1.2
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	4.89	0.9412
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.004G059500 [exp]	5.47	0.9271
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	5.65	0.9364	Pt-SAH7.1
AT2G16600		ROC3	rotamase CYP 3 (.1.2)		Potri.004G168800 [exp]	6.32	0.9071	VCCYP.1
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Potri.007G052600 [exp]	6.70	0.9212

Compare expression of checked genes

Potri.011G162000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.