Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25020 129 / 3e-33 AtRLP42 receptor like protein 42 (.1) AT2G33030 120 / 1e-32 AtRLP25 receptor like protein 25 (.1) AT3G24982 125 / 5e-32 ATRLP40 receptor like protein 40 (.1) AT3G25010 124 / 1e-31 AtRLP41 receptor like protein 41 (.1) AT4G13920 123 / 5e-31 AtRLP50 receptor like protein 50 (.1) AT2G33060 122 / 6e-31 AtRLP27 receptor like protein 27 (.1) AT5G40170 121 / 1e-30 AtRLP54 receptor like protein 54 (.1) AT2G33020 121 / 2e-30 AtRLP24 receptor like protein 24 (.1) AT2G25440 121 / 2e-30 AtRLP20 receptor like protein 20 (.1) AT2G32660 119 / 8e-30 AtRLP22 receptor like protein 22 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G127101 [exp] 166 / 7e-46 AT1G47890 580 / 0.0 receptor like protein 7 (.1) Potri.016G127000 [exp] 164 / 2e-45 AT1G47890 588 / 0.0 receptor like protein 7 (.1) Potri.016G126900 [exp] 160 / 5e-44 AT1G45616 510 / 5e-165 receptor like protein 6 (.1) Potri.012G019850 [exp] 140 / 4e-37 AT4G13810 309 / 2e-94 receptor like protein 47 (.1.2) Potri.T125004 [exp] 139 / 2e-36 AT1G45616 384 / 9e-117 receptor like protein 6 (.1) Potri.001G389100 [exp] 137 / 4e-36 AT5G27060 468 / 1e-149 receptor like protein 53 (.1) Potri.009G112061 [exp] 137 / 5e-36 AT1G45616 405 / 1e-124 receptor like protein 6 (.1) Potri.012G025300 [exp] 135 / 2e-35 AT2G33060 357 / 9e-111 receptor like protein 27 (.1) Potri.012G009400 [exp] 134 / 4e-35 AT2G33060 414 / 3e-132 receptor like protein 27 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002214 [exp] 126 / 1e-32 AT3G05660 293 / 2e-89 receptor like protein 33 (.1) Lus10011064 [exp] 125 / 6e-32 AT1G45616 366 / 2e-111 receptor like protein 6 (.1) Lus10003387 [exp] 123 / 3e-31 AT1G47890 394 / 3e-120 receptor like protein 7 (.1) Lus10024721 [exp] 121 / 2e-30 AT3G23110 369 / 1e-114 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10011039 [exp] 120 / 6e-30 AT3G11010 367 / 5e-110 receptor like protein 34 (.1) Lus10032335 [exp] 117 / 3e-29 AT3G23110 372 / 7e-116 EMBRYO DEFECTIVE 2800, receptor like protein 37 (.1) Lus10014905 [exp] 113 / 4e-28 AT1G47890 240 / 4e-70 receptor like protein 7 (.1) Lus10003389 [exp] 105 / 4e-25 AT1G45616 432 / 7e-135 receptor like protein 6 (.1) Lus10006825 [exp] 103 / 2e-24 AT1G47890 377 / 6e-114 receptor like protein 7 (.1) Lus10014910 [exp] 102 / 8e-24 AT1G71400 357 / 7e-110 receptor like protein 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.011G162101.1 pacid=42781815 polypeptide=Potri.011G162101.1.p locus=Potri.011G162101 ID=Potri.011G162101.1.v4.1 annot-version=v4.1 ATGCTCGCCAATTCATCAGGGCACCCCGCATGCCATTGCGAAGAGCGCTCTGCCCTGTTGCAATTCAAGGAAAGCTTTATTCTTAGCCGGTCTGCTTCCA AATTCCCTTTTGCTTATCCAAAGGTTGAGTCCTCGAAGCTTGACGGAAATGGTAGTGACTGTTGCTTATGGGATGGTGTCGAGTGCGATGAGGATACTGG TCATGTGATTGAACTTGACTCAACGCTAGTTGTCTCTATGGTTCCATTGACTCCAACAGGCCTTTGGTTACTCAACCTTTCCAACAATATCTTCTCTGGT TTCATCCCGTCATCCATTGGGAATCTAGCGAAGCTCGAAGCACTGGACTTGTCTCAAAACAAGCTTTCTGGGAACATCCCTAAGCAACTTGTGCAGCTAA CCTTCCTTCAGTTCTTCAATGCATCTCATAATCATCTTACTGGGCCAATACCACGAGGAAACCAATTCAATACATTTCAGAAAGATTCATTTGATGGCAA TTCAGGACTGAGCGGAGAGCCATTGTCAAACAAATGTGGAAGTCTCAAGGCCTTACCTGCTCCGGCTCCGGCTACAGGAGATGAACTTTTGGGACTTGAC TGGAAATTTGTTCTGATTGGTTATGGAAGTGGATTTGTCATTGGAGCAGCTATAGGACACTTTGTAACGAAAAGAAAACATGATTGGCTGGAAACATTTA GAATCCAACGTGAGTCCCATAATAAATTCAACGGTCCAGATTTCTCCAATCTCTACATCTTTCTCACTGCCACCACCACCTTTTTCTCTCATTTTCTTCC TGCAAAACACAAACACAGACAGACAAAAACAAAAACACCACAGCTTTGGTCTGGTTGTGGTGGTTTTTTGTTGTTCAAAGAGAAGAAAGGAAGAAACCCA TTAAAGATTAAGCTACACAACTAA
AA sequence Show only first row Show all	>Potri.011G162101.1 pacid=42781815 polypeptide=Potri.011G162101.1.p locus=Potri.011G162101 ID=Potri.011G162101.1.v4.1 annot-version=v4.1 MLANSSGHPACHCEERSALLQFKESFILSRSASKFPFAYPKVESSKLDGNGSDCCLWDGVECDEDTGHVIELDSTLVVSMVPLTPTGLWLLNLSNNIFSG FIPSSIGNLAKLEALDLSQNKLSGNIPKQLVQLTFLQFFNASHNHLTGPIPRGNQFNTFQKDSFDGNSGLSGEPLSNKCGSLKALPAPAPATGDELLGLD WKFVLIGYGSGFVIGAAIGHFVTKRKHDWLETFRIQRESHNKFNGPDFSNLYIFLTATTTFFSHFLPAKHKHRQTKTKTPQLWSGCGGFLLFKEKKGRNP LKIKLHN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25020		AtRLP42	receptor like protein 42 (.1)		Potri.011G162101 [exp]	0	1
AT1G64460			Protein kinase superfamily pro...		Potri.002G171400 [exp]	19.69	0.5883
					Potri.011G075450 [exp]	23.02	0.5568
AT3G01130			unknown protein		Potri.004G164066 [exp]	23.28	0.6186
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.005G169000 [exp]	156.81	0.4641
AT4G27220			NB-ARC domain-containing disea...		Potri.001G443966 [exp]	159.47	0.4816

Compare expression of checked genes

Potri.011G162101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.