Plant FIBer expression Database

Potri.011G162400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G20880 75 / 3e-14 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
AT5G44350 48 / 1e-05 ethylene-responsive nuclear protein -related (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G464300
[exp]
432 / 8e-149 AT4G20880 85 / 1e-17 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10023347
[exp]
77 / 2e-15 AT4G20880 88 / 2e-19 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
Lus10038459
[exp]
77 / 3e-15 AT4G20880 92 / 2e-21 ethylene-responsive nuclear protein / ethylene-regulated nuclear protein (ERT2) (.1)
PFAM info
Representative CDS sequence
>Potri.011G162400.2 pacid=42782006 polypeptide=Potri.011G162400.2.p locus=Potri.011G162400 ID=Potri.011G162400.2.v4.1 annot-version=v4.1
ATGCCTTTTCCGTGGAAGAAGGACAAAGTTGCAAGATTTTCACGTATTGTGGCAGATCTTCAGTCGCCAAAAAGAGGGAATTCTCTTGTTGTTGAGACTG
GTTTCCCTACTTCTCTTGTTGATCTCTTTGTCAAGAACCGTGAAAGGTTAAAGAAACCAACTGGCAAGAAGAAGAAGAAGAAGAAGAGACAACAGCAGTT
GCAAGAGGTGGAGGAGGAACTTGTAATCTCTGATCCTATTTTTGTATCAAGTTCTATAGAGTTGGTGGATTCACCAGGGCCTATTCAGAATTTGGAGAAT
ATGGAGAGTTTTGATGTATGTGATTTGGTGAGTCAGTTATTGCCTGTTGTTGAAGATGATGAAGATGTTGAAGATGTTGAAGATGTTGATGATGTTAAGG
TTACTGATAAGAAATGTTGGAATGAGAAAGAGAAACGTTTGTTATTTGTGGTTTTGAAGATGTTTTTGGTGGTGGTTTTGGGTTTAAGTACTAAAAAGCT
TGTAGTTGGGATAACAATGTCTGCTTTTGTGCTTATTTTTCTTGAATATGTTGGAAAGCATGTGTTATGTTTCTTGAAACCATGTCTCAATGTAGAGATA
GTCTTAGAACTATTTGTCGAAAGGGTTTCTTCAGCATTTCTGATGTTGAAAGGAGTAAGGAAATGTGATGATTCAAGAAAAGAATTGATCATTCAAGAGA
TAGAACAAGAAGAAGATGTTGGGATTGATTCTTGTGATTTAATTGAGACTCTTGAAATGAAGTCTTCCCTCGAGGAAACTCAAGCTCTAGAATTTAATTT
TGATAGGATTGTGCCAGTTGAAGCAAATAGGGGAGCTGAATCAAGAATGGATTTGCTCGTTTGTGATTGGAGAATTATGGAGGTAGAGGAAGATAAAAGT
GGAGTTTTGGTATGCGAAAAAGAGCGAAGCCGAAAATCAAAAATCAGAAGAAAGATCATAAAGAAATTGGTGCCAAAGAAGTTGCGGGCTATAAAGAAGG
CGAAAAAGAGCAAGGGGCAAGAACCAGATGTCGGTAGTGAATCATCTAGTTGTTGGGGAGACGATGAGATGGGGATAATTGAAGTGCTAGAAGATGGTGA
CAAACAAGGGTTTGAAAACAAAGGCAAGGCCTTGCTATCAAAGTTGGAGGAAGAGGAAGAGGAAGAGGAAGAAGAAGAAGAGGGAATAAAAGAGAGGAGA
AAAGGAAAAGAACCTGATCAAGGAAATTCTAGCTCTAGCACTGGATGGCAGGCTGAAACGGAAGTAGTAGTAGTTGATAAAAAGGGCAGTTCAGATTATC
TGATTCTCTTTTTTGTTGCTCTTGCTGGTCTTGTAGGAGGTCGGAGTCTATCCCTTGTGCTTACACTTGCATCATGTTTGCTGATAAAATTGATTGGAAG
ATTTAGATGTGTAAACGAGCCAGTGAATAGGTCCCGAGCTTCAATCTCAAGCTAG
AA sequence
>Potri.011G162400.2 pacid=42782006 polypeptide=Potri.011G162400.2.p locus=Potri.011G162400 ID=Potri.011G162400.2.v4.1 annot-version=v4.1
MPFPWKKDKVARFSRIVADLQSPKRGNSLVVETGFPTSLVDLFVKNRERLKKPTGKKKKKKKRQQQLQEVEEELVISDPIFVSSSIELVDSPGPIQNLEN
MESFDVCDLVSQLLPVVEDDEDVEDVEDVDDVKVTDKKCWNEKEKRLLFVVLKMFLVVVLGLSTKKLVVGITMSAFVLIFLEYVGKHVLCFLKPCLNVEI
VLELFVERVSSAFLMLKGVRKCDDSRKELIIQEIEQEEDVGIDSCDLIETLEMKSSLEETQALEFNFDRIVPVEANRGAESRMDLLVCDWRIMEVEEDKS
GVLVCEKERSRKSKIRRKIIKKLVPKKLRAIKKAKKSKGQEPDVGSESSSCWGDDEMGIIEVLEDGDKQGFENKGKALLSKLEEEEEEEEEEEEGIKERR
KGKEPDQGNSSSSTGWQAETEVVVVDKKGSSDYLILFFVALAGLVGGRSLSLVLTLASCLLIKLIGRFRCVNEPVNRSRASISS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G20880 ethylene-responsive nuclear pr... Potri.011G162400
[exp]
0 1
AT1G67920 unknown protein Potri.008G134100
[exp]
2.00 0.8242
AT3G14470 NB-ARC domain-containing disea... Potri.001G025400
[exp]
7.48 0.8184
AT1G49780 PUB26 plant U-box 26 (.1) Potri.009G100200
[exp]
11.66 0.6944
AT5G25190 AP2_ERF ESE3 ethylene and salt inducible 3,... Potri.001G048200
[exp]
14.86 0.7531
AT5G38200 Class I glutamine amidotransfe... Potri.010G120600
[exp]
18.49 0.7504
AT3G14470 NB-ARC domain-containing disea... Potri.004G170000
[exp]
22.91 0.7760
AT4G16820 PLA-I{beta]2 phospholipase A I beta 2, alph... Potri.003G081500
[exp]
22.95 0.7300
Potri.001G443025
[exp]
23.87 0.7582
AT4G03270 CYCD6;1 Cyclin D6;1 (.1) Potri.011G040500
[exp]
25.29 0.7285
AT1G76210 Arabidopsis protein of unknown... Potri.005G248700
[exp]
30.19 0.6278

Potri.011G162400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.