Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-TUB4.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23860 847 / 0 TUB8, b-TUB tubulin beta 8 (.1.2) AT5G62700 844 / 0 atgcp3, TUB3 tubulin beta chain 3 (.1) AT5G62690 844 / 0 TUB2 tubulin beta chain 2 (.1) AT2G29550 843 / 0 TUB7 tubulin beta-7 chain (.1) AT5G12250 843 / 0 TUB6 beta-6 tubulin (.1) AT4G20890 843 / 0 TUB9 tubulin beta-9 chain (.1) AT1G20010 842 / 0 TUB5 tubulin beta-5 chain (.1) AT1G75780 840 / 0 TUB1 tubulin beta-1 chain (.1) AT5G44340 839 / 0 TUB4 tubulin beta chain 4 (.1) AT1G64740 369 / 1e-124 TUA1 alpha-1 tubulin (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G464400 [exp] 867 / 0 AT5G62700 850 / 0.0 tubulin beta chain 3 (.1) Potri.016G033200 [exp] 845 / 0 AT5G12250 862 / 0.0 beta-6 tubulin (.1) Potri.001G106100 [exp] 845 / 0 AT5G23860 858 / 0.0 tubulin beta 8 (.1.2) Potri.003G125400 [exp] 845 / 0 AT5G23860 857 / 0.0 tubulin beta 8 (.1.2) Potri.006G035400 [exp] 844 / 0 AT5G12250 860 / 0.0 beta-6 tubulin (.1) Potri.009G040200 [exp] 844 / 0 AT5G23860 864 / 0.0 tubulin beta 8 (.1.2) Potri.002G021800 [exp] 843 / 0 AT1G20010 838 / 0.0 tubulin beta-5 chain (.1) Potri.006G095000 [exp] 843 / 0 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.015G038800 [exp] 842 / 0 AT5G12250 849 / 0.0 beta-6 tubulin (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023348 [exp] 865 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10038458 [exp] 865 / 0 AT2G29550 850 / 0.0 tubulin beta-7 chain (.1) Lus10040712 [exp] 848 / 0 AT5G23860 923 / 0.0 tubulin beta 8 (.1.2) Lus10016448 [exp] 848 / 0 AT5G23860 921 / 0.0 tubulin beta 8 (.1.2) Lus10036069 [exp] 845 / 0 AT5G12250 914 / 0.0 beta-6 tubulin (.1) Lus10026813 [exp] 845 / 0 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10027476 [exp] 843 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10039231 [exp] 843 / 0 AT5G23860 912 / 0.0 tubulin beta 8 (.1.2) Lus10021094 [exp] 843 / 0 AT1G75780 857 / 0.0 tubulin beta-1 chain (.1) Lus10017217 [exp] 840 / 0 AT1G75780 854 / 0.0 tubulin beta-1 chain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.011G162500.1 pacid=42781839 polypeptide=Potri.011G162500.1.p locus=Potri.011G162500 ID=Potri.011G162500.1.v4.1 annot-version=v4.1 ATGAGAGAAATCCTTCACATTCAAGGGGGTCAATGTGGGAATCAAATTGGGGCCAAGTTTTGGGAGGTGATCTGTGATGAACATGGGATTGATCAGTCAG GGAGGTACAGTGGAGACTCAGATCTTCAATTGGAGAGGATTAATGTGTATTACAATGAAGCAAGTGGTGGAAGATATGTGCCACGTGCTGTTCTTATGGA TCTTGAACCTGGTACCATGGATTCAGTCAGATCTGGTCCTTTTGGACAGATTTTTAGGCCTGATAACTTCGTTTTTGGCCAATCCGGTGCTGGTAATAAC TGGGCTAAAGGGCATTACACTGAAGGAGCTGAATTGATTGATTCTGTTCTTGATGTTGTCAGGAAAGAAGCTGAAAATTGTGATTGCTTGCAAGGATTTC AAGTTTGCCATTCTTTGGGTGGAGGCACTGGTTCTGGCATGGGAACTCTTCTTATTTCTAAAATTCGTGAGGAGTATCCTGATCGCATGATGTTGACATT TTCCGTCTTCCCTTCACCTAAGGTATCTGACACTGTTGTTGAACCATACAATGCAACTCTTTCTGTCCACCAGCTTGTAGAAAACGCTGATGAATGCATG GTTTTGGACAATGAAGCTTTGTATGACATCTGCTTCCGCACTCTCAAGCTTGCTACCCCCACTTTTGGGGATCTTAACCATCTCATTTCTGCCACCATGA GCGGTGTCACATGCTGCCTTCGCTTCCCAGGACAGCTGAACTCTGACCTACGAAAGCTCGCAGTTAACCTTATCCCATTCCCTCGTCTTCATTTCTTCAT GGTTGGATTTGCACCCTTGACATCAAGAGGATCACAGCAATACCGTGCTCTGACTGTGCCTGAACTAACCCAGCAAATGTGGGATGCCAAGAACATGATG TGTGCTGCTGACCCACGTCATGGCCGTTATCTAACTGCTTCAGCCATGTTCCGTGGTAAGATGAGCACTAAAGAGGTCGATGAACAAATGATAAATGTCC AGAACAAGAACTCGTCATACTTTGTTGAGTGGATTCCCAACAATGTAAAGTCCAGTGTATGTGACATCCCACCGAAGGGTCTGAAGATGGCATCCACTTT CATAGGGAATTCAACTTCAATCCAGGAGATGTTCAGGCGTGTCAGTGAACAATTCACAGCTATGTTCAGGCGCAAGGCTTTCTTGCACTGGTACACTGGC GAGGGAATGGACGAGATGGAATTTACTGAGGCTGAGAGTAACATGAACGATCTGGTTGCTGAGTATCAGCAATACCAGGATGCAACTATCGATGAAGAGG AGTACGAGGAGGAAGAGGAAGAGGAACATGATACTTAA
AA sequence Show only first row Show all	>Potri.011G162500.1 pacid=42781839 polypeptide=Potri.011G162500.1.p locus=Potri.011G162500 ID=Potri.011G162500.1.v4.1 annot-version=v4.1 MREILHIQGGQCGNQIGAKFWEVICDEHGIDQSGRYSGDSDLQLERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPFGQIFRPDNFVFGQSGAGNN WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFSVFPSPKVSDTVVEPYNATLSVHQLVENADECM VLDNEALYDICFRTLKLATPTFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGSQQYRALTVPELTQQMWDAKNMM CAADPRHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPPKGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTG EGMDEMEFTEAESNMNDLVAEYQQYQDATIDEEEYEEEEEEEHDT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.011G162500 [exp]	0	1	Pt-TUB4.1
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	1.00	0.9200
AT2G44740		CYCP4;1	cyclin p4;1 (.1)		Potri.012G114600 [exp]	5.09	0.9085
AT1G52155			unknown protein		Potri.001G187300 [exp]	10.72	0.8744
AT5G01460			LMBR1-like membrane protein (....		Potri.006G100200 [exp]	12.04	0.9003
AT1G52780			Protein of unknown function (D...		Potri.001G175600 [exp]	13.56	0.9008
AT5G42570			B-cell receptor-associated 31-...		Potri.011G007200 [exp]	13.74	0.8910
AT5G06970			Protein of unknown function (D...		Potri.001G030100 [exp]	21.21	0.8854
AT5G21070			unknown protein		Potri.004G196600 [exp]	21.35	0.9011
AT1G52140			unknown protein		Potri.014G139900 [exp]	23.23	0.8378
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	24.73	0.8953

Compare expression of checked genes

Potri.011G162500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.