Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GER2.26
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05950 209 / 2e-68 RmlC-like cupins superfamily protein (.1) AT5G39160 206 / 2e-67 RmlC-like cupins superfamily protein (.1.2.3) AT5G39190 206 / 3e-67 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39120 202 / 7e-66 RmlC-like cupins superfamily protein (.1) AT5G39130 201 / 2e-65 RmlC-like cupins superfamily protein (.1) AT5G39150 199 / 1e-64 RmlC-like cupins superfamily protein (.1) AT5G39110 199 / 2e-64 RmlC-like cupins superfamily protein (.1) AT5G39180 197 / 5e-64 RmlC-like cupins superfamily protein (.1) AT5G38960 197 / 5e-64 RmlC-like cupins superfamily protein (.1) AT3G04200 196 / 3e-63 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162200 [exp] 266 / 4e-91 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464000 [exp] 259 / 1e-88 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 254 / 2e-86 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464500 [exp] 248 / 4e-83 AT5G39190 203 / 2e-65 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.011G162932 [exp] 241 / 3e-81 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 239 / 1e-80 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163800 [exp] 238 / 7e-80 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.001G465100 [exp] 228 / 5e-76 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163216 [exp] 226 / 4e-75 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035278 [exp] 243 / 5e-82 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10030048 [exp] 242 / 2e-81 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 241 / 5e-81 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10035280 [exp] 239 / 2e-80 AT3G05950 252 / 2e-85 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 237 / 1e-79 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3) Lus10034254 [exp] 236 / 6e-79 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10030047 [exp] 235 / 6e-79 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1) Lus10035185 [exp] 234 / 3e-78 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 233 / 4e-78 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032016 [exp] 230 / 1e-76 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.011G162600.1 pacid=42781078 polypeptide=Potri.011G162600.1.p locus=Potri.011G162600 ID=Potri.011G162600.1.v4.1 annot-version=v4.1 ATGGCTTCCCAGATCTTGGTGATTGTTAGCTTCCTAGCCATCTCCTGTTCCTTGGCCGCTGCCGGCATTGAGCCTGGTCCACTGCAAGATTTCTGTGTTG CAGATCCTACTAGCTCAGCTTGCCTGGATCCGAAGCTGGTAAAGCCTGATAATTTTTTCTCTGGAGGCTTCCATGTTCCTGGCAACACATCAAACCCCTC TGGCTCCTCTGTTACATCAGCTTCTGTCGCCCAAATACCAGGCCTAAACACCCTTGGACTCACACTCATTCGCTTTGACTTCGCACAAGGTGGTCTCGTC ACTCCTCACATTCACCCTCGTGCAAGTGAGATTCTTACCGTCTTGGAAGGCAGCCTCCTTGTTGGGTTTGTGTCCTCTTTCCCGGAAAACAGGCTCTTTT CCAAGGTCCTTGAGCAGGGAGACGTCTTTGTTTTTCCCATAGGACTTGCTCATTTCTTGAGTAATGTGGGCAACGGAACTGCTGCTGCTATTGCTTCTTT GAACAGCCAGAACCCTGGTTTTATTGCTATTCCTAGCAATATATTTGGAACCAATCCACCCATTGGTGATGATGTTCTAGCCAAGGCTTATAATGTCGAC AAGTCCATTGTTGAGAAACTTAGAGCACAGTTCCACAGTTAA
AA sequence Show only first row Show all	>Potri.011G162600.1 pacid=42781078 polypeptide=Potri.011G162600.1.p locus=Potri.011G162600 ID=Potri.011G162600.1.v4.1 annot-version=v4.1 MASQILVIVSFLAISCSLAAAGIEPGPLQDFCVADPTSSACLDPKLVKPDNFFSGGFHVPGNTSNPSGSSVTSASVAQIPGLNTLGLTLIRFDFAQGGLV TPHIHPRASEILTVLEGSLLVGFVSSFPENRLFSKVLEQGDVFVFPIGLAHFLSNVGNGTAAAIASLNSQNPGFIAIPSNIFGTNPPIGDDVLAKAYNVD KSIVEKLRAQFHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G05950			RmlC-like cupins superfamily p...		Potri.011G162600 [exp]	0	1	Pt-GER2.26
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.014G090700 [exp]	10.29	0.8749
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.002G164900 [exp]	15.49	0.8669
AT1G78290		SRK2C, SNRK2-8,...	SNF1-RELATED PROTEIN KINASE 2C...		Potri.005G072600 [exp]	16.24	0.8644
AT5G16770	MYB	ATMYB9	myb domain protein 9 (.1.2)		Potri.019G050900 [exp]	16.55	0.8701	MYB101.1
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.005G211800 [exp]	27.74	0.8547
AT5G44440			FAD-binding Berberine family p...		Potri.011G162666 [exp]	30.65	0.8612
AT5G56220			P-loop containing nucleoside t...		Potri.001G472200 [exp]	30.98	0.8567
					Potri.007G113700 [exp]	36.05	0.8515
AT3G22600			Bifunctional inhibitor/lipid-t...		Potri.002G050300 [exp]	37.06	0.8607
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	37.78	0.8588

Compare expression of checked genes

Potri.011G162600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.