Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20820 533 / 0 FAD-binding Berberine family protein (.1) AT5G44440 516 / 9e-180 FAD-binding Berberine family protein (.1) AT4G20860 503 / 1e-174 FAD-binding Berberine family protein (.1) AT1G30700 499 / 6e-173 FAD-binding Berberine family protein (.1) AT5G44360 488 / 1e-168 FAD-binding Berberine family protein (.1) AT5G44410 488 / 2e-168 FAD-binding Berberine family protein (.1) AT5G44400 487 / 3e-168 FAD-binding Berberine family protein (.1) AT1G34575 483 / 1e-166 FAD-binding Berberine family protein (.1) AT1G30710 480 / 2e-165 FAD-binding Berberine family protein (.1) AT1G30760 477 / 3e-164 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162884 [exp] 813 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 809 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 805 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 801 / 0 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 766 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162856 [exp] 764 / 0 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162800 [exp] 763 / 0 AT5G44440 540 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 754 / 0 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 753 / 0 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 610 / 0 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 545 / 0 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 536 / 0 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 531 / 0 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 520 / 0 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 512 / 5e-178 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10008410 [exp] 509 / 8e-178 AT5G44390 436 / 8e-149 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 511 / 2e-177 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 508 / 3e-176 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 503 / 6e-175 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G162732.1 pacid=42780602 polypeptide=Potri.011G162732.1.p locus=Potri.011G162732 ID=Potri.011G162732.1.v4.1 annot-version=v4.1 ATGATCGAAATGATTTCTCTTAGTTCTTCAATGCTGCCACTTCTGTTTGTTCTTCTCTTTTCATTCTCATGGGTGACTTCAGCTCACACTCATGAAGATT TTATTGAATGTTTTTCCCTTTACGTTGAAGACTCCACAGACATTTCCAAAGTCATTTACACCCAGAATGACTCTTCATATCCTTCTGTGTTGCATTTCGC AATACGAAACCTTAGGTTCAATTCTACTACCCTAAAGCCTCTTGTCATTGTTACACCGACGAATGTATCACACATTCAGGCTGCCATTCGTTGTTCCCAG AAAAATAATTTACAAATTAGAATTCGAAGTGGTGGCCATGATTTTGAGGGTCTCTCTTACATGTCTGTTCTGCCGTTTGTCATCCTTGATCTAATCAATT TTCGATCAGTCACCATTGATGTAACTAATAAAACTGCATGGGTTCAGGCTGGTGCAACTGTAGGGGAACTTTACTATCACATTGCTAAAAAAGGTAGAAC ACTTGCCTTCCCAGCAGGTATTTGCCCTACTATGGGTGTTGGGGGACACTTGAGTGGTGGAGGGTATGGAGCGCTGCTTCGTAAATATGGTCTTGCTGCG GATAACGTAATTGATGCAGAATTAATTGATGCTAATGGTAGAGTTCTTGATAGAATATCGATGGGAGAAGATTTGTTTTGGGCCCTTCGAGGAGGTGGAG GAAACAGCTTTGGAGTGGTTATTGCGTGGAAAATAAAATTGGTTGAAGTTCCACCTACGTTGACAGTCTTCAATGTCTTAAGAACCTTGGAGCAAAATGC AACCCAACTTATCCATCGGTGGCAATACATTGCAAATAAGCTCCATGAAGATCTCATGATCACGACATATATAAGAAGAGTTAATTCCAGTCAAGGAAAT CCAACAATACAGGCTACATTTGCAGGTTTCTTTCTTGGAGGGGTGGACAAGCTTCTTCAATTGATGAATGAGAGCTTCCCCGAGCTTGGTTTAGCAAAAG ATGATTGCCTTGAAACAAGCTGGATTGAGGCTATCATCCTTAACAGATTTCCAGGTAATACATCTTTGGAACTGTTGCTTGATAGGACTCCTCGATTTGT AACAAATTACAAAGCGAAATCTGATTACGTCAAGGAACCTATGCCTGAAATTGCTTTGGAAGGTATATTTGAAAGGTTCTTGGAAGAGGACATTGAAACA CCTAGACTGCTATTAGTTCCTTATGGAGGAAAGATGGACCAGATTTCTGAGTCTAGCTCTCCATTTCCACATAGAGCTGGAAATATATACAAGATTGAGC ATCAGGTGTCTTGGAGTGAAGAAGGCAAGGAGGCATCTAAAAGGCACGTTGATTGGATTAGAAGGCTTTACAGTTACATGACTCCTTACGTTTCGAAAAA TCCTCGAGAAGCATATATCAATTATAGGGATCTTGACATTGGAATGAATAGCCTGGCAGGCAACACAAGTTATGAACAAGCAAGCATTTGGGGTAGGAAG TATTTCAAGAACAACTTTGACAAGCTGGTACGCGTGAAGACTGCTGTTGATCCTGCTAATTTCTTCAGAAATGAGCAGAGTATTCCACCTCTCCCGTCCT GGTGA
AA sequence Show only first row Show all	>Potri.011G162732.1 pacid=42780602 polypeptide=Potri.011G162732.1.p locus=Potri.011G162732 ID=Potri.011G162732.1.v4.1 annot-version=v4.1 MIEMISLSSSMLPLLFVLLFSFSWVTSAHTHEDFIECFSLYVEDSTDISKVIYTQNDSSYPSVLHFAIRNLRFNSTTLKPLVIVTPTNVSHIQAAIRCSQ KNNLQIRIRSGGHDFEGLSYMSVLPFVILDLINFRSVTIDVTNKTAWVQAGATVGELYYHIAKKGRTLAFPAGICPTMGVGGHLSGGGYGALLRKYGLAA DNVIDAELIDANGRVLDRISMGEDLFWALRGGGGNSFGVVIAWKIKLVEVPPTLTVFNVLRTLEQNATQLIHRWQYIANKLHEDLMITTYIRRVNSSQGN PTIQATFAGFFLGGVDKLLQLMNESFPELGLAKDDCLETSWIEAIILNRFPGNTSLELLLDRTPRFVTNYKAKSDYVKEPMPEIALEGIFERFLEEDIET PRLLLVPYGGKMDQISESSSPFPHRAGNIYKIEHQVSWSEEGKEASKRHVDWIRRLYSYMTPYVSKNPREAYINYRDLDIGMNSLAGNTSYEQASIWGRK YFKNNFDKLVRVKTAVDPANFFRNEQSIPPLPSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G20820			FAD-binding Berberine family p...		Potri.011G162732 [exp]	0	1
AT5G44440			FAD-binding Berberine family p...		Potri.011G162800 [exp]	1.00	0.9391
AT1G32450		NRT1.5	nitrate transporter 1.5 (.1)		Potri.014G179400 [exp]	4.58	0.8803
					Potri.001G276304 [exp]	5.91	0.8689
AT3G03280			unknown protein		Potri.016G128800 [exp]	7.34	0.8700
AT5G63060			Sec14p-like phosphatidylinosit...		Potri.012G088350 [exp]	9.59	0.8724
AT3G22910			ATPase E1-E2 type family prote...		Potri.016G009101 [exp]	10.48	0.8704
AT5G44440			FAD-binding Berberine family p...		Potri.011G162856 [exp]	13.60	0.8095
AT2G29060	GRAS		GRAS family transcription fact...		Potri.001G242100 [exp]	13.74	0.8406
AT3G25400			unknown protein		Potri.014G148200 [exp]	14.73	0.8242
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.004G133100 [exp]	16.61	0.8684

Compare expression of checked genes

Potri.011G162732 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.