Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G44440 540 / 0 FAD-binding Berberine family protein (.1) AT4G20820 532 / 0 FAD-binding Berberine family protein (.1) AT1G30700 506 / 7e-176 FAD-binding Berberine family protein (.1) AT4G20860 499 / 5e-173 FAD-binding Berberine family protein (.1) AT5G44410 497 / 3e-172 FAD-binding Berberine family protein (.1) AT5G44360 492 / 2e-170 FAD-binding Berberine family protein (.1) AT5G44400 486 / 4e-168 FAD-binding Berberine family protein (.1) AT1G30760 479 / 2e-165 FAD-binding Berberine family protein (.1) AT2G34790 473 / 8e-163 MEE23, EDA28 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) AT1G26420 473 / 1e-162 FAD-binding Berberine family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G162856 [exp] 1023 / 0 AT5G44440 545 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G163232 [exp] 1007 / 0 AT5G44440 536 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162940 [exp] 1004 / 0 AT5G44440 543 / 0.0 FAD-binding Berberine family protein (.1) Potri.001G464800 [exp] 840 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162884 [exp] 804 / 0 AT4G20820 527 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162968 [exp] 803 / 0 AT4G20820 525 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162900 [exp] 803 / 0 AT4G20820 526 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162828 [exp] 790 / 0 AT5G44440 521 / 0.0 FAD-binding Berberine family protein (.1) Potri.011G162732 [exp] 763 / 0 AT4G20820 534 / 0.0 FAD-binding Berberine family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032943 [exp] 617 / 0 AT4G20820 503 / 2e-174 FAD-binding Berberine family protein (.1) Lus10012641 [exp] 557 / 0 AT5G44440 518 / 2e-180 FAD-binding Berberine family protein (.1) Lus10038436 [exp] 543 / 0 AT4G20820 508 / 1e-176 FAD-binding Berberine family protein (.1) Lus10039682 [exp] 534 / 0 AT5G44440 481 / 9e-166 FAD-binding Berberine family protein (.1) Lus10026775 [exp] 532 / 0 AT5G44390 448 / 5e-153 FAD-binding Berberine family protein (.1) Lus10001965 [exp] 516 / 6e-180 AT5G44390 454 / 2e-155 FAD-binding Berberine family protein (.1) Lus10038446 [exp] 516 / 8e-180 AT4G20860 520 / 0.0 FAD-binding Berberine family protein (.1) Lus10038439 [exp] 512 / 3e-178 AT1G30700 540 / 0.0 FAD-binding Berberine family protein (.1) Lus10023363 [exp] 508 / 6e-177 AT2G34790 504 / 1e-175 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1) Lus10023361 [exp] 504 / 1e-174 AT2G34790 674 / 0.0 MATERNAL EFFECT EMBRYO ARREST 23, EMBRYO SAC DEVELOPMENT ARREST 28, FAD-binding Berberine family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [poplar] [flax] FAD_PCMH PF01565 [poplar] [flax] FAD_binding_4 FAD binding domain CL0277 [poplar] [flax] FAD-oxidase_C PF08031 [poplar] [flax] BBE Berberine and berberine like
Representative CDS sequence Show only first row Show all	>Potri.011G162800.1 pacid=42781611 polypeptide=Potri.011G162800.1.p locus=Potri.011G162800 ID=Potri.011G162800.1.v4.1 annot-version=v4.1 ATGACTTCTATGAGCTCTTCAATGCTGCCATTCCTACTTTGTCTTCTCTTTTCATTGTCACGTGTAACATCAGCTCGTCCTCATGAAGATTTTCTTCAAT GCCTTTCCCTTCATTTTGAGGACTCCACAGCCATCTCTAAAGTTATTTACACCCCAAAAAACTCATCATATTCTTCTATCTTGCATTTCGCTATACGAAA CCCCAGGTTCAATTCTTCTGAACTGAAACCTTTTGTCATTGTTACACCAACGGATGCATCGCACATCCAGGCTGCCATCCATTGTTCCCAAAAACACAAG TTAGAAATTAGAATTCGGAGTGGCGGTCATGATTTTGAGGGTCTATCTTACATGTCTACTGTCCCATTTGTCATTGTTGATCTGATCAATCTTAGATCAA TCACTGTTGATGCAACCAATAAAACTGCATGGGTTCAGGCTGGCGCAACACTAGGGGAACTTTATTATAGAATTGCTGAGAAAAGTAGAACTCTTGCTTT CCCTGCAGGTTCTTGCCCTACTATTGGTGTTGGAGGACACTTTAGTGGGGGAGGATATAGCACGATCTCTCGCAAATACGGCCTTGCTTCAGATAATGTG ATTGATGCTCAGTTAATCGATGCTAAAGGAAGGATCCTTGATAGAGAATCAATGGGAGAAGACTTATTTTGGGCCATTCGGGGCGGTGGAGGGCAAAGCT TTGGAGTGGTTATCGCATGGAGAATCGAGTTGGTTGAAGTTCCACCAAAAGTGACCGTCTTTACTGCAGCAAGAACCTTGGAACAAAATGCAACCAAGCT CATCCATCGGTGGCAATACGTTGCGAATCAGCTTCCTGAAGACATCATCATCGATGTGCTTGTAAACAGAGTTAATTCTAGTGAGGAAGGAAAGTCAACA ATACAAGCTGCATTCTTTTCCTTGTTTCTTGGTGAGGTTGACCAGCTTCTTCTTTTGATGCAAGAGAGCTTTCCTGAGCTTGGTTTGGCCAAAGATGAGT GCACGGAAATGAGCTGGATTGAGTCTGTCATCTACATTATTGGATTTCCAAGCAACGCATCCTTGAATGTGTTACTTGATAGGACTCCTCAACCACCCTC ATTACAATTCAAAGCAAAATCTGACTACGTCCAGGAACCTATACCTGAAATTGCATTTGAAGGGATATGGAAAAGGTTCTTTGAGAAAGACATCGAGGTG CCTGTATTTTTCATGATCCCTTATGGGGGGAAAATGGATGAGATTTCGGAGTCCAGCACTCCATTCCCTCATAGAGCTGGCAATCGATACATATTTGTCC CCGTAGTGTCTTGGAGTGAAGAAACCAAGGAGGCATCCCAGAGGCATCTAGCTTGGATCAGAAGGCTGTACAGGTACATGACTCCTTATGTTTCAAAAAA TCCTCGAGCAGCATATGTCAATTATAGAGATCTTGACCTAGGAGTGAACAACCTGGGATACACGAGTTATAAACAAGCAAGCATTTGGGGTCGGAAGTAT TTCAAGAACAACTTCGACAGGTTGGTTCGCGTTAAGACTGAAGTTGATCCTACCAATTTCTTCAGAAATGAACAAAGTATCCCACCTCTCTCATCTTGGT GA
AA sequence Show only first row Show all	>Potri.011G162800.1 pacid=42781611 polypeptide=Potri.011G162800.1.p locus=Potri.011G162800 ID=Potri.011G162800.1.v4.1 annot-version=v4.1 MTSMSSSMLPFLLCLLFSLSRVTSARPHEDFLQCLSLHFEDSTAISKVIYTPKNSSYSSILHFAIRNPRFNSSELKPFVIVTPTDASHIQAAIHCSQKHK LEIRIRSGGHDFEGLSYMSTVPFVIVDLINLRSITVDATNKTAWVQAGATLGELYYRIAEKSRTLAFPAGSCPTIGVGGHFSGGGYSTISRKYGLASDNV IDAQLIDAKGRILDRESMGEDLFWAIRGGGGQSFGVVIAWRIELVEVPPKVTVFTAARTLEQNATKLIHRWQYVANQLPEDIIIDVLVNRVNSSEEGKST IQAAFFSLFLGEVDQLLLLMQESFPELGLAKDECTEMSWIESVIYIIGFPSNASLNVLLDRTPQPPSLQFKAKSDYVQEPIPEIAFEGIWKRFFEKDIEV PVFFMIPYGGKMDEISESSTPFPHRAGNRYIFVPVVSWSEETKEASQRHLAWIRRLYRYMTPYVSKNPRAAYVNYRDLDLGVNNLGYTSYKQASIWGRKY FKNNFDRLVRVKTEVDPTNFFRNEQSIPPLSSW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G44440			FAD-binding Berberine family p...		Potri.011G162800 [exp]	0	1
AT4G20820			FAD-binding Berberine family p...		Potri.011G162732 [exp]	1.00	0.9391
AT5G44440			FAD-binding Berberine family p...		Potri.011G162856 [exp]	2.44	0.9213
AT5G44440			FAD-binding Berberine family p...		Potri.011G163232 [exp]	3.00	0.8830
AT5G44440			FAD-binding Berberine family p...		Potri.011G162940 [exp]	8.48	0.8403
AT5G55490		GEX1, ATGEX1	gamete expressed protein 1 (.1...		Potri.017G137100 [exp]	9.00	0.7457
					Potri.001G276304 [exp]	9.38	0.8435
AT2G38740			Haloacid dehalogenase-like hyd...		Potri.002G135000 [exp]	9.53	0.8249
					Potri.015G098650 [exp]	12.16	0.8802
					Potri.018G112701 [exp]	13.67	0.8130
					Potri.010G171350 [exp]	14.28	0.7863

Compare expression of checked genes

Potri.011G162800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.