Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) AT3G05950 257 / 3e-87 RmlC-like cupins superfamily protein (.1) AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) AT5G39190 255 / 1e-86 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39110 253 / 9e-86 RmlC-like cupins superfamily protein (.1) AT5G39120 247 / 2e-83 RmlC-like cupins superfamily protein (.1) AT5G39150 246 / 3e-83 RmlC-like cupins superfamily protein (.1) AT5G39180 246 / 4e-83 RmlC-like cupins superfamily protein (.1) AT3G04200 243 / 6e-82 RmlC-like cupins superfamily protein (.1) AT5G38940 242 / 1e-81 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G163300 [exp] 402 / 8e-145 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3) Potri.001G465100 [exp] 353 / 3e-125 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163800 [exp] 347 / 6e-123 AT5G39130 255 / 1e-86 RmlC-like cupins superfamily protein (.1) Potri.011G162932 [exp] 346 / 1e-122 AT3G05950 268 / 1e-91 RmlC-like cupins superfamily protein (.1) Potri.011G163200 [exp] 344 / 5e-122 AT3G05950 266 / 5e-91 RmlC-like cupins superfamily protein (.1) Potri.011G162200 [exp] 279 / 3e-96 AT5G39190 246 / 4e-83 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.001G464100 [exp] 273 / 1e-93 AT5G39190 231 / 3e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Potri.013G052100 [exp] 273 / 2e-93 AT5G39110 285 / 2e-98 RmlC-like cupins superfamily protein (.1) Potri.001G464000 [exp] 272 / 2e-93 AT5G39190 231 / 4e-77 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035185 [exp] 312 / 3e-109 AT5G39160 265 / 2e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035186 [exp] 310 / 2e-108 AT5G39190 265 / 2e-90 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032016 [exp] 309 / 6e-108 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3) Lus10035278 [exp] 308 / 1e-107 AT3G05950 254 / 3e-86 RmlC-like cupins superfamily protein (.1) Lus10032015 [exp] 308 / 2e-107 AT5G39160 262 / 3e-89 RmlC-like cupins superfamily protein (.1.2.3) Lus10034254 [exp] 303 / 1e-105 AT5G39160 251 / 6e-85 RmlC-like cupins superfamily protein (.1.2.3) Lus10030048 [exp] 303 / 1e-105 AT3G05950 249 / 3e-84 RmlC-like cupins superfamily protein (.1) Lus10026962 [exp] 303 / 1e-105 AT3G05950 251 / 6e-85 RmlC-like cupins superfamily protein (.1) Lus10032017 [exp] 303 / 4e-104 AT3G05950 252 / 5e-84 RmlC-like cupins superfamily protein (.1) Lus10035279 [exp] 296 / 7e-103 AT5G39160 244 / 2e-82 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF07883 [poplar] [flax] Cupin_2 Cupin domain
Representative CDS sequence Show only first row Show all	>Potri.011G163216.1 pacid=42780906 polypeptide=Potri.011G163216.1.p locus=Potri.011G163216 ID=Potri.011G163216.1.v4.1 annot-version=v4.1 ATGGCTGCTTCCATTATTTTCTTTGGATTTCTAGCTTTGTCCTTCTCCTTTGCCTTGGCATCAGATCCGAGCCCACTTCAAGACTTCTGTGTGGCAGGTG GAGATGGCAATGTTCTTGTCAATGGCTTGGCTTGCAAGGACCCCAAGAGTGTTCAAGCTAGTGACTTCTCTTTCAGTGGACTTCACATGCTAGGCAACAC ATCAAATGCAGTGGGGTCGAGGGTAACTGCAGTGAATGTAGCCCAAATACCAGGACTTAACACACTTGGTATCTCTTTTGCACGCATTGACTATGCACCA GCTGGTATTAACCCTCCACACACGCACCCTCGTGCCTCTGAAATCTTGACAGTTCTTGAAGGTAGTCTTGAAGTTGGATTTGTTACTTCTAACCCTGAAA ACCGTCTCATTACCAAGGTCTTACAAAAGGGTGATGTGTTTGTGTTCCCTATCAATCTTGTTCACTTTCAAAGAAATGTGGGAACGAGCAATGCTGTTGC CCTAGCAGCCTTGAGCAGCCAAAACCCAGGTGTCATCACCATTGCGAATGCTGTGTTTGGGTCTAATCCAGACATTCCTAGCGACATTCTTGCAAAGGCT TTCCAGTTGCACAAGAATGTTGTCAATTCCCTGCAATCAAAGTTCTAG
AA sequence Show only first row Show all	>Potri.011G163216.1 pacid=42780906 polypeptide=Potri.011G163216.1.p locus=Potri.011G163216 ID=Potri.011G163216.1.v4.1 annot-version=v4.1 MAASIIFFGFLALSFSFALASDPSPLQDFCVAGGDGNVLVNGLACKDPKSVQASDFSFSGLHMLGNTSNAVGSRVTAVNVAQIPGLNTLGISFARIDYAP AGINPPHTHPRASEILTVLEGSLEVGFVTSNPENRLITKVLQKGDVFVFPINLVHFQRNVGTSNAVALAALSSQNPGVITIANAVFGSNPDIPSDILAKA FQLHKNVVNSLQSKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163216 [exp]	0	1
					Potri.007G117900 [exp]	2.64	0.9964
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Potri.004G180400 [exp]	4.24	0.9963
AT3G02100			UDP-Glycosyltransferase superf...		Potri.017G091500 [exp]	6.32	0.9954
AT5G39160			RmlC-like cupins superfamily p...		Potri.011G163300 [exp]	6.92	0.9932	GER2.30
AT5G48450		SKS3	SKU5 similar 3 (.1)		Potri.008G032100 [exp]	7.34	0.9960
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.016G015800 [exp]	7.41	0.9924
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.010G000400 [exp]	8.48	0.9959	MALD1.1
AT4G34860		A/N-InvB	alkaline/neutral invertase B, ...		Potri.005G239400 [exp]	11.22	0.9938
AT3G17675			Cupredoxin superfamily protein...		Potri.013G061300 [exp]	12.48	0.9948
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Potri.008G213223 [exp]	13.78	0.9929

Compare expression of checked genes

Potri.011G163216 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.